CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98457	Canola	plastid	51.76	98.1
CDX97576	Canola	plastid	97.32	97.32
CDX98456	Canola	cytosol	40.87	95.69
CDX82482	Canola	cytosol	61.81	93.18
CDY39117	Canola	mitochondrion	86.1	92.95
CDY33218	Canola	plastid	92.46	92.31
CDY57471	Canola	cytosol	61.14	92.17
AT3G14440.1	Thale cress	plastid	91.62	91.32
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	65.83	77.67
VIT_19s0093g00550.t01	Wine grape	plastid	72.36	70.94
Solyc07g056570.1.1	Tomato	plastid	70.18	69.26
Zm00001d027690_P001	Maize	cytosol	8.88	68.83
Zm00001d023690_P001	Maize	cytosol	15.08	68.7
Zm00001d008638_P001	Maize	cytosol	9.38	68.29
Os12t0617400-01	Rice	cytosol	31.83	67.14
CDY26294	Canola	plastid	65.83	66.72
CDY61838	Canola	plastid	65.66	66.55
CDX88443	Canola	plastid	67.0	66.45
CDY52448	Canola	plastid	66.83	66.28
GSMUA_Achr6P31180_001	Banana	plastid	64.99	64.34
GSMUA_Achr4P22870_001	Banana	plastid	64.66	64.23
CDX99475	Canola	plastid	62.48	64.2
KRH43866	Soybean	plastid	49.25	64.05
CDX78842	Canola	plastid	61.81	63.51
GSMUA_Achr2P12950_001	Banana	plastid	62.48	63.33
CDY55629	Canola	cytosol, plastid	61.81	63.29
GSMUA_Achr7P01250_001	Banana	plastid	63.82	63.18
GSMUA_Achr5P02570_001	Banana	plastid	64.49	63.11
CDY01534	Canola	cytosol, plastid	61.47	62.95
TraesCS5D01G383500.1	Wheat	plastid	62.65	62.86
TraesCS5B01G375900.1	Wheat	plastid	62.65	62.86
TraesCS5A01G374000.1	Wheat	plastid	62.14	62.77
GSMUA_Achr4P31460_001	Banana	plastid	63.15	62.52
Os03t0645900-00	Rice	plastid	63.48	62.34
HORVU5Hr1G008050.1	Barley	plastid	63.32	62.27
TraesCS5B01G029300.1	Wheat	plastid	63.82	62.05
Zm00001d031086_P001	Maize	plastid	58.96	61.86
Zm00001d033222_P001	Maize	extracellular	62.48	61.76
TraesCS5D01G038800.1	Wheat	plastid	63.48	61.63
Zm00001d018819_P001	Maize	plastid	58.79	61.26
Zm00001d013689_P001	Maize	plastid	61.64	61.23
EER93751	Sorghum	plastid	62.65	61.21
OQU88453	Sorghum	plastid	58.63	61.08
Zm00001d007876_P001	Maize	plastid	58.29	60.52
Os07t0154100-01	Rice	plastid	58.29	59.79
TraesCS2D01G251600.1	Wheat	plastid	58.29	59.79
HORVU5Hr1G054970.1	Barley	cytosol	60.8	59.7
Zm00001d041319_P001	Maize	plastid	59.63	58.94
TraesCS2B01G268400.1	Wheat	plastid	58.46	58.56
HORVU5Hr1G092850.2	Barley	plastid	63.15	58.54
Zm00001d000095_P001	Maize	cytosol	16.08	58.54
HORVU5Hr1G044510.1	Barley	cytosol	58.63	58.33
TraesCS2A01G250600.1	Wheat	plastid	57.29	57.67
Zm00001d000157_P001	Maize	cytosol	9.72	55.24
CDX77467	Canola	plastid	52.6	53.68
CDX85148	Canola	cytosol	52.26	53.33
KRH13600	Soybean	plastid	47.91	49.74
Zm00001d023458_P001	Maize	cytosol	11.56	48.94
Zm00001d042076_P001	Maize	cytosol, plastid	33.84	48.1
Zm00001d022623_P001	Maize	cytosol	27.3	43.7
Zm00001d035724_P001	Maize	plastid	40.54	38.11
Zm00001d019813_P001	Maize	plastid	11.56	36.51
CDY53711	Canola	cytosol	31.99	36.38
CDX93902	Canola	cytosol	31.66	36.0
CDY34746	Canola	cytosol	7.54	35.16
CDX76489	Canola	plastid	31.16	34.96
CDX99397	Canola	plastid	34.34	34.57
CDX78923	Canola	plastid	34.17	34.23
CDY34748	Canola	endoplasmic reticulum, extracellular	27.3	33.75
Zm00001d009286_P001	Maize	plastid	12.73	30.16
CDX76782	Canola	mitochondrion	30.82	30.07
CDX76783	Canola	plastid	29.98	29.3
CDY34747	Canola	cytosol	6.53	28.89
Zm00001d033377_P001	Maize	plastid	13.07	27.46
Zm00001d027592_P001	Maize	mitochondrion	18.59	26.06

Protein Annotations

EnsemblPlants:CDX98455	EnsemblPlantsGene:GSBRNA2T00106070001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	ProteinID:CDX98455	ProteinID:CDX98455.1	SEG:seg
UniParc:UPI0004EE85EF	MapMan:11.1.1.4	:	:	:	:

Description

BnaC05g39200D

Coordinates

chrLK031905:-:214050..215843

Molecular Weight (calculated)

65849.1 Da

IEP (calculated)

6.431

GRAVY (calculated)

-0.318

Length

597 amino acids

Sequence
(BLAST)

001: MASFTATTAV SRRWVGGNHT KPPLSSSQSS ALSYSCSVPM TNRSQRKLNV SSALHTHPAL HFPKQSSTSP AIVVNPKTKE SDTKQMNLFQ RAAAAALDAA
101: EGFLVSHERQ HPLPKTADPS VQIAGNFAPV NEQPLRRNLP VVGKIPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEDGSASYA CRFTQTNRFI
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGLVDP AHGTGVANAG LVYFNNRLLA MSEDDSPYQV RITPGGDLKT VGRYDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGE KSPDVEIQLD QPTMMHDFAI TENFVVIPDQ QVVFKLQEMI RGGSPVIYDK EKVARFGILD KYAADSSGIR
401: WIEAPDCFCF HLWNAWEEPE TEEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLRTGE STRRPIISDG EEQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DITTGEVKKH LYGDNRYGGE PLFLPGEGAE DDGHILCFVH DEKTWKSELQ IVNAVCLEVE ATVKLPSRVP YGFHGTFIGA SDLAKQV

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.