CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	EES01648	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018819_P001	Maize	plastid	93.72	93.72
Zm00001d007876_P001	Maize	plastid	92.15	91.83
Os07t0154100-01	Rice	plastid	80.98	79.73
TraesCS2D01G251600.1	Wheat	plastid	80.45	79.21
TraesCS2B01G268400.1	Wheat	plastid	79.93	76.85
TraesCS2A01G250600.1	Wheat	plastid	79.06	76.39
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	60.21	68.18
Bra001552.1-P	Field mustard	cytosol	46.95	67.93
CDY57471	Canola	cytosol	46.95	67.93
CDX82482	Canola	cytosol	46.77	67.68
Zm00001d042076_P001	Maize	cytosol, plastid	48.69	66.43
CDX98456	Canola	cytosol	29.32	65.88
EER93751	Sorghum	plastid	69.28	64.98
GSMUA_Achr2P12950_001	Banana	plastid	65.62	63.84
Bra012603.1-P	Field mustard	cytosol	49.04	63.57
CDY39117	Canola	mitochondrion	60.91	63.11
GSMUA_Achr6P31180_001	Banana	plastid	66.32	63.02
Zm00001d022623_P001	Maize	cytosol	40.84	62.73
GSMUA_Achr4P22870_001	Banana	plastid	65.79	62.73
GSMUA_Achr7P01250_001	Banana	plastid	65.79	62.52
GSMUA_Achr5P02570_001	Banana	plastid	66.14	62.13
GSMUA_Achr4P31460_001	Banana	plastid	63.7	60.53
VIT_19s0093g00550.t01	Wine grape	plastid	63.7	59.93
CDY33218	Canola	plastid	62.13	59.53
Bra021558.1-P	Field mustard	plastid	61.78	59.2
PGSC0003DMT400039054	Potato	plastid	59.86	59.14
Solyc07g056570.1.1	Tomato	plastid	62.3	59.01
VIT_10s0003g03750.t01	Wine grape	plastid	62.13	58.84
Solyc08g016720.1.1	Tomato	plastid	59.51	58.69
CDX98455	Canola	plastid	61.08	58.63
CDX97576	Canola	plastid	61.08	58.63
Bra027336.1-P	Field mustard	plastid	61.08	58.63
CDY52448	Canola	plastid	61.08	58.14
Bra008358.1-P	Field mustard	plastid	59.51	58.09
Bra035033.1-P	Field mustard	plastid	60.91	57.97
CDX88443	Canola	plastid	60.73	57.81
Bra032359.1-P	Field mustard	plastid	58.99	57.48
AT3G14440.1	Thale cress	plastid	60.03	57.43
AT1G30100.1	Thale cress	plastid	58.99	57.39
CDY26294	Canola	plastid	58.99	57.39
CDY61838	Canola	plastid	58.81	57.22
Bra013298.1-P	Field mustard	plastid	57.07	56.28
CDX99475	Canola	plastid	56.89	56.11
CDY55629	Canola	cytosol, plastid	57.07	56.09
AT4G18350.1	Thale cress	cytosol, plastid	57.07	56.09
CDX78842	Canola	plastid	56.72	55.94
CDY01534	Canola	cytosol, plastid	56.89	55.92
AT1G78390.1	Thale cress	cytosol, plastid	61.61	53.73
CDX98457	Canola	plastid	28.62	52.06
KRH45171	Soybean	plastid	12.74	44.24
KXG30924	Sorghum	plastid	39.62	35.64
OQU93261	Sorghum	cytosol	33.68	35.48
OQU89285	Sorghum	plastid	27.23	25.53
OQU89281	Sorghum	cytosol	21.82	25.25
KXG19379	Sorghum	mitochondrion, plastid	23.39	22.52

Protein Annotations

EnsemblPlants:OQU88453	EnsemblPlantsGene:SORBI_3002G037400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF49	PFAM:PF03055	ProteinID:OQU88453	ProteinID:OQU88453.1	SEG:seg	UniParc:UPI0009DC92C7
UniProt:A0A1W0W278	MapMan:11.1.1.4	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:3667938..3669659

Molecular Weight (calculated)

61893.8 Da

IEP (calculated)

6.460

GRAVY (calculated)

-0.197

Length

573 amino acids

Sequence
(BLAST)

001: MASSISVPAP PAAPATAAPS QARPKKPSQL NLTTGKTKTP VPARPMRAVP EWNPLQRLAA AALDAVEEGL VAGFLERAHP LPRTADPAVQ IAGNYAPVGE
101: RPPTGDLPVS GRVPACLDGV YVRNGANPLH APRAGHHLFD GDGMLHAVRL RAGRAESYAC RFTETARLRQ ERAIGRPVFP KAIGELHGHS GVARLLLFGA
201: RSLCGLLDAS RGVGVANAGL VYHDNRLLAM SEDDLPYHVR VTADGDLETV GRYDFGGQLD TAMIAHPKLD PATGELFSLS YNVVTKPFLK YFYFTADGRK
301: SPDVEIPVDA PTMMHDFAVT ENHAIIPDQQ IVFKLQEMLL GGSPVVYDKN KTARFGVLPK RATDASRLQW VEVPDCFCFH LWNAWEDDAT GDIVVIGSCM
401: TPADAVFNES AAGEESFRSV LSEIRLDPRT GTSSRRAVLS DADQVNLEAG MVNRQLLGRK TRYAYLAIAE PWPKVSGFAK VDLEAGTVEK FIYGEGRYGG
501: EPCFVPRPDA PAGAAEDDGY VLCYVHDEGR GASEMLVVNA RDMRAEAAVK LPGRVPYGLH GTFIVGEELQ RQA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.