CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045232_P001	Maize	plastid	82.69	80.26
Os06t0162550-00	Rice	mitochondrion, plastid	71.43	74.3
Solyc08g066720.1.1	Tomato	cytosol	34.12	49.03
VIT_11s0016g02740.t01	Wine grape	cytosol	15.13	48.13
VIT_04s0008g03510.t01	Wine grape	cytosol	45.38	47.62
OQU89281	Sorghum	cytosol	37.82	45.45
KRH52736	Soybean	mitochondrion, plastid	42.86	43.44
KRH52732	Soybean	plastid	42.02	43.03
KRH62062	Soybean	cytosol, plastid	41.51	42.66
PGSC0003DMT400011006	Potato	cytosol	42.02	41.19
KRH62063	Soybean	cytosol	33.28	40.99
OQU89285	Sorghum	plastid	41.51	40.43
PGSC0003DMT400011015	Potato	plastid	41.34	40.13
VIT_04s0008g03480.t01	Wine grape	cytosol	46.55	39.86
VIT_04s0008g03450.t01	Wine grape	plastid	21.68	29.86
OQU93261	Sorghum	cytosol	23.87	26.1
OQU88453	Sorghum	plastid	22.52	23.39
KXG30924	Sorghum	plastid	22.35	20.88
EER93751	Sorghum	plastid	21.34	20.79

Protein Annotations

EnsemblPlants:KXG19379	EnsemblPlantsGene:SORBI_3010G050300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF82	PFAM:PF03055	ProteinID:KXG19379	ProteinID:KXG19379.2	UniParc:UPI0009DC8B95	UniProt:A0A194YHD3
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:3870297..3876032

Molecular Weight (calculated)

67660.0 Da

IEP (calculated)

6.965

GRAVY (calculated)

-0.493

Length

595 amino acids

Sequence
(BLAST)

001: MFRAGLKPTT TSSSSRCIHS RRAPDHALPF NPPNAIKVPP SSGLKKHIQE MSQTLKSVSS NLLERFIDRA YRFSEQPSLN EGNFRPVNEM DEAVLLNNLD
101: GEVPGDFPEG VYIRNGPNPL NPTQTIADSI FGSTSYMYYE GHGMLHAVYF DKSSLGEWKI SYRNKYVNSD TFQLERKNQV AFVPSADGQP YATLVAFVLN
201: ILRFEKAVKD SANTNIFEHA GRAFAVTENH LPYEINISNL NTLGPYNING AWNQPFTSHP KKIHESGELV MMGTNPEKPH YVLGVISPDG ERLVHKADLK
301: FEEGKLIHDI GVTKRYNIIM DYPLRFGISR TFLRKPFIEN DMNGKSRIGV MPRFGDAESI IWFDVENHCS YHLFNCFEDE NEVVIRGCRL LGSIIPSGRH
401: RVDKSKWYGR AFLQPDKDSE DFDPSLDGTL FSRPYEWRLN LENGSVHEGY ITSEKVAMDF PVISDKFVGV QNKYGYAQVA DSLATSKTGL FKFKMIAKLH
501: FNMPDKENKQ LISVEYHTLQ EKQFCSGVQF VAKKNGIDED DGWIVTYVHD EGTNSSQVYI IDAKRFSEEP VAKITLPQRV PYGFHGNFFY TSNQR

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.