CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01648
EES19864
OQU87436

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	EES01648	AT5G17790.1	15340011
AT4G19170.1	EES19864	AT5G56760.1	21798944
AT4G19170.1	OQU87436	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051556_P001	Maize	plastid	94.51	94.36
Zm00001d017766_P001	Maize	plastid	94.19	93.9
TraesCS6A01G271600.1	Wheat	plastid	78.65	78.4
Os02t0704000-01	Rice	plastid	78.49	78.37
TraesCS6D01G251800.1	Wheat	plastid	78.18	77.93
HORVU6Hr1G068720.1	Barley	plastid	78.65	77.92
TraesCS6B01G298800.1	Wheat	plastid	78.34	77.61
Bra013378.1-P	Field mustard	peroxisome	51.96	65.67
AT4G19170.1	Thale cress	plastid	54.95	58.82
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	22.14	58.75
CDX78923	Canola	plastid	54.32	58.05
PGSC0003DMT400004981	Potato	plastid	53.85	58.04
CDX99397	Canola	plastid	54.0	58.01
CDX76489	Canola	plastid	48.19	57.71
Bra020970.1-P	Field mustard	plastid	50.71	56.97
KRH76475	Soybean	plastid	52.75	56.95
Solyc08g075490.2.1	Tomato	plastid	52.9	56.73
VIT_02s0087g00910.t01	Wine grape	plastid	52.9	56.26
VIT_02s0087g00930.t01	Wine grape	plastid	51.02	55.18
PGSC0003DMT400047548	Potato	cytosol	32.81	55.0
Solyc08g075480.2.1	Tomato	plastid	49.61	54.77
PGSC0003DMT400047553	Potato	plastid	47.1	52.17
GSMUA_Achr4P19020_001	Banana	plastid	42.7	51.71
VIT_16s0039g01370.t01	Wine grape	plastid	43.64	49.82
PGSC0003DMT400004975	Potato	plastid	26.37	49.12
OQU88453	Sorghum	plastid	35.64	39.62
OQU93261	Sorghum	cytosol	30.46	35.66
EER93751	Sorghum	plastid	33.91	35.35
OQU89281	Sorghum	cytosol	19.31	24.85
OQU89285	Sorghum	plastid	23.55	24.55
KXG19379	Sorghum	mitochondrion, plastid	20.88	22.35

Protein Annotations

MapMan:9.1.6.3.2	UniProt:A0A194YRR3	InterPro:Carotenoid_Oase	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0010287	GO:GO:0016702	GO:GO:0046872
GO:GO:0055114	EnsemblPlants:KXG30924	ProteinID:KXG30924	ProteinID:KXG30924.1	PFAM:PF03055	PANTHER:PTHR10543
PANTHER:PTHR10543:SF46	EnsemblPlantsGene:SORBI_3004G268500	UniParc:UPI0001C80C3F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:61268235..61270278

Molecular Weight (calculated)

68330.3 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.177

Length

637 amino acids

Sequence
(BLAST)

001: MERTLITSNL SMSAHASRSS GRVHYISPAA SAAAQNSSYR KKKKSAPSPP PSAAATATVV TSPPATDNVQ SSAVKQTGRQ ELEELVATKA NTSRIASAPS
101: QAQARAQPRR RPAPAATSLP MAFCSALEEA INTFVDPPAL RPSVDPRNVL STNFAPVDEL PPTPCPVVRG AIPRCLAGGA YIRNGPNPQH LPRGPHHLFD
201: GDGMLHSLLL PTAESPSSDP VLCSRYVQTY KYLVERDAGA PVMPNVFSGF HGVAGLARGA VVAARVLTGQ MNPAEGVGLA NTSLAFFGGR LYALGESDLP
301: YAVRVDPATG EVTTHGRCDF GGRLFMGMTA HPKKDPVTGE VFAFRYGPVP PFVTYFRFDP AGNKGPDVPI FSVQQPSFLH DFAVTERYAI FPEIQIVMQP
401: MGMVAGGAPV GSDAGKVPRL GVLPKYATDE SEMRWFEVPG FNIMHSLNAW EEADGEELVL VAPNVLSVEH ALERMELVHS CVEKVRINLR TGAVSRTPLS
501: AGNLDFGVIH PGYLGRRNRY GYLGIGDPMP KISGVAKLDL DRAGTGDCTV ARRDFGPSCF AGEPFFVPDD VEGNGNEDDG YLVCYVHNER TGENLFVVMD
601: ARSPQLDIVA EVELPTRVPY GFHGIFVTKA ELQAQQQ

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.