Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020069_P002 | Maize | plastid | 74.47 | 81.4 |
| OQU89281 | Sorghum | cytosol | 64.81 | 80.0 |
| HORVU1Hr1G000550.2 | Barley | cytosol | 65.47 | 68.26 |
| Os09t0321200-00 | Rice | plastid | 63.01 | 67.54 |
| HORVU5Hr1G055740.1 | Barley | plasma membrane | 70.54 | 67.03 |
| TraesCS5D01G186900.1 | Wheat | cytosol | 70.38 | 66.46 |
| TraesCS5B01G180500.1 | Wheat | cytosol | 70.7 | 64.38 |
| KXG19379 | Sorghum | mitochondrion, plastid | 40.43 | 41.51 |
| OQU93261 | Sorghum | cytosol | 25.37 | 28.49 |
| OQU88453 | Sorghum | plastid | 25.53 | 27.23 |
| EER93751 | Sorghum | plastid | 25.86 | 25.86 |
| KXG30924 | Sorghum | plastid | 24.55 | 23.55 |
Protein Annotations
| EnsemblPlants:OQU89285 | EnsemblPlantsGene:SORBI_3002G168800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 |
| PANTHER:PTHR10543:SF30 | PFAM:PF03055 | ProteinID:KXG35393.1 | ProteinID:OQU89285 | ProteinID:OQU89285.1 | SEG:seg |
| UniParc:UPI00081ABCBE | UniProt:A0A1B6QBT6 | MapMan:50.1.12 | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:53189952..53202997
Molecular Weight (calculated)
67552.3 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.245
Length
611 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLKASASFS PSLPLPLSCR INGGRPSMSM SAGARTAASV GTSSQKPLLG ELLGNLSSKM DRASKALKDV PQRFLDVLVD ATFKFTDEAL NPSESNFAPV
101: DEIGEAIEIH QNQVEGAIPD DFPEGVYIRN GSNPLFGALH STSSIFGQSR EIWVEGEGML HALYLTKNTS GSWSVSYANR YVQSETLKLE TARQKPCFLP
201: AIEGDSAAII AAYIFNHLRF GKVNKDISNT NVFEHAGRVF AVAENHLPQE IGIDNLDTSG TWDVGGEWDR PAFTAHPKVA PGSGELVIFG MDAKRPFLVI
301: GVVSADGTKL KHRVDLKLDR STLCHDIGVT LKHNVIMDIP LTIDISRLVK GGQLIQFEKE SYARIGVMPR YGDADSVVWF NVEPFCMFHL VNCFEEGDEV
401: VVQGLRSPDS IIPGPRLAPN KCDSKMSELT EDDKPNEGTT KEFFFRLYQW RLNLKTKSVS GEYLTGTEFS FEFPIINNQY TGLQHSYAYA QIVDSCENCG
501: KVNPKYGGFA KFYLDERNNT EISGASPIKM QYHWLGKHKF CSGASFVPRV GGSHENDGWI ISFVHDEKAN TSQVHIVDAK RFEDAPVAKI TLPRRVPYGF
601: HGTFISKKLI M
101: DEIGEAIEIH QNQVEGAIPD DFPEGVYIRN GSNPLFGALH STSSIFGQSR EIWVEGEGML HALYLTKNTS GSWSVSYANR YVQSETLKLE TARQKPCFLP
201: AIEGDSAAII AAYIFNHLRF GKVNKDISNT NVFEHAGRVF AVAENHLPQE IGIDNLDTSG TWDVGGEWDR PAFTAHPKVA PGSGELVIFG MDAKRPFLVI
301: GVVSADGTKL KHRVDLKLDR STLCHDIGVT LKHNVIMDIP LTIDISRLVK GGQLIQFEKE SYARIGVMPR YGDADSVVWF NVEPFCMFHL VNCFEEGDEV
401: VVQGLRSPDS IIPGPRLAPN KCDSKMSELT EDDKPNEGTT KEFFFRLYQW RLNLKTKSVS GEYLTGTEFS FEFPIINNQY TGLQHSYAYA QIVDSCENCG
501: KVNPKYGGFA KFYLDERNNT EISGASPIKM QYHWLGKHKF CSGASFVPRV GGSHENDGWI ISFVHDEKAN TSQVHIVDAK RFEDAPVAKI TLPRRVPYGF
601: HGTFISKKLI M
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.