CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	EES01648	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033222_P001	Maize	extracellular	94.44	95.53
Zm00001d013689_P001	Maize	plastid	91.16	92.68
Zm00001d008638_P001	Maize	cytosol	11.78	87.8
Zm00001d023690_P001	Maize	cytosol	18.66	87.02
Zm00001d027690_P001	Maize	cytosol	10.97	87.01
Os03t0645900-00	Rice	plastid	85.76	86.18
TraesCS5D01G383500.1	Wheat	plastid	82.65	84.87
TraesCS5A01G374000.1	Wheat	plastid	82.0	84.77
TraesCS5B01G375900.1	Wheat	plastid	82.0	84.2
HORVU5Hr1G092850.2	Barley	plastid	82.32	78.11
HORVU5Hr1G054970.1	Barley	cytosol	76.92	77.3
HORVU5Hr1G044510.1	Barley	cytosol	74.3	75.67
Bra001552.1-P	Field mustard	cytosol	46.15	71.21
CDX82482	Canola	cytosol	46.15	71.21
CDY57471	Canola	cytosol	45.5	70.2
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	57.61	69.57
OQU88453	Sorghum	plastid	64.98	69.28
Bra012603.1-P	Field mustard	cytosol	49.75	68.78
CDX98456	Canola	cytosol	28.48	68.24
GSMUA_Achr4P22870_001	Banana	plastid	65.3	66.39
CDY39117	Canola	mitochondrion	60.07	66.37
GSMUA_Achr2P12950_001	Banana	plastid	63.5	65.87
GSMUA_Achr5P02570_001	Banana	plastid	65.63	65.74
GSMUA_Achr7P01250_001	Banana	plastid	64.48	65.34
GSMUA_Achr4P31460_001	Banana	plastid	63.67	64.51
GSMUA_Achr6P31180_001	Banana	plastid	63.5	64.34
Bra021558.1-P	Field mustard	plastid	62.03	63.38
Bra027336.1-P	Field mustard	plastid	61.87	63.32
CDY33218	Canola	plastid	61.87	63.21
CDX97576	Canola	plastid	61.37	62.81
CDX98455	Canola	plastid	61.21	62.65
PGSC0003DMT400039054	Potato	plastid	59.41	62.59
VIT_19s0093g00550.t01	Wine grape	plastid	62.36	62.56
AT3G14440.1	Thale cress	plastid	61.21	62.44
Solyc08g016720.1.1	Tomato	plastid	59.08	62.13
VIT_10s0003g03750.t01	Wine grape	plastid	60.72	61.32
CDX88443	Canola	plastid	60.39	61.3
CDY52448	Canola	plastid	60.23	61.13
AT1G30100.1	Thale cress	plastid	58.92	61.12
Bra013298.1-P	Field mustard	plastid	58.1	61.1
Bra035033.1-P	Field mustard	plastid	60.07	60.96
Bra032359.1-P	Field mustard	plastid	58.59	60.88
Solyc07g056570.1.1	Tomato	plastid	60.23	60.83
CDX99475	Canola	plastid	57.77	60.76
CDY26294	Canola	plastid	58.43	60.61
CDY61838	Canola	plastid	58.43	60.61
CDX78842	Canola	plastid	57.61	60.59
CDY55629	Canola	cytosol, plastid	57.77	60.55
CDY01534	Canola	cytosol, plastid	57.61	60.38
AT4G18350.1	Thale cress	cytosol, plastid	57.12	59.86
Bra008358.1-P	Field mustard	plastid	57.28	59.63
AT1G78390.1	Thale cress	cytosol, plastid	61.21	56.93
CDX98457	Canola	plastid	29.3	56.83
KRH45171	Soybean	plastid	11.13	41.21
OQU93261	Sorghum	cytosol	31.91	35.85
KXG30924	Sorghum	plastid	35.35	33.91
OQU89285	Sorghum	plastid	25.86	25.86
OQU89281	Sorghum	cytosol	20.62	25.45
KXG19379	Sorghum	mitochondrion, plastid	20.79	21.34

Protein Annotations

EnsemblPlants:EER93751	EnsemblPlantsGene:SORBI_3001G155300	EntrezGene:8062208	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	ProteinID:EER93751	ProteinID:EER93751.1	RefSeq:XP_002466753.1
SEG:seg	UniParc:UPI0001A82B11	UniProt:C5WR66	MapMan:11.1.1.4	:	:

Description

hypothetical protein

Coordinates

chr1:-:12561395..12563230

Molecular Weight (calculated)

66373.8 Da

IEP (calculated)

6.473

GRAVY (calculated)

-0.212

Length

611 amino acids

Sequence
(BLAST)

001: MQSLAPPTSV SIHRQHLPAS GSSRARASNS VRFSPRAVSS VPRATAPAER LQAPFHKPGA ADLPAQSKKP ATAIAVPRHA AAPRKAGGKK QLNFFQRAAA
101: AALDAFEEGF VANVLERPHG LPSTADPAVQ IAGNFAPVGE RPPVRELPVS GRIPPFINGV YARNGANPCF DPVAGHHLFD GDGMVHALRI RNGVAESYAC
201: RFTETARLTQ ERAIGRPVFP KAIGELHGHS GIARLALFYA RAACGLVDPS AGTGVANAGL VYFNGHLLAM SEDDLPYHVR VADDGDLETV GRYDFDGQLG
301: CAMIAHPKLD PVTGELHALS YDVIKKPYLK YFYFRPDGTK SDDVEIPLDQ PTMIHDFAIT ENFVVVPDHQ VVFKLQEMLR GGSPVVLDKE KTSRFGVLPK
401: HASDASEMVW VDVPDCFCFH LWNAWEDEAT GEVVVIGSCM TPADSIFNES DERLESVLTE IRLDTRTGRS TRRAVLPPSQ QVNLEVGMVN RNLLGRKTRY
501: AYLAVAEPWP KVSGFAKVDL ETGELTKFEY GEGRFGGEPC FVPMDPSAAH PRGEDDGYVL TFVHDERAGT SELLVVNAAD MRLEATVQLP SRVPFGFHGT
601: FITGKELEAQ A

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.