Factsheet for Bra012603.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55629	Canola	cytosol, plastid	99.55	75.47
CDY01534	Canola	cytosol, plastid	97.29	73.76
Bra001552.1-P	Field mustard	cytosol	65.16	72.73
Bra013298.1-P	Field mustard	plastid	93.89	71.43
AT4G18350.1	Thale cress	cytosol, plastid	92.99	70.5
Zm00001d023690_P001	Maize	cytosol	20.81	70.23
Zm00001d027690_P001	Maize	cytosol	12.22	70.13
Zm00001d008638_P001	Maize	cytosol	12.9	69.51
Os12t0617400-01	Rice	cytosol	41.4	64.66
Bra032359.1-P	Field mustard	plastid	75.57	56.8
PGSC0003DMT400039054	Potato	plastid	72.4	55.17
Solyc08g016720.1.1	Tomato	plastid	71.95	54.73
Bra021558.1-P	Field mustard	plastid	72.17	53.34
Bra027336.1-P	Field mustard	plastid	71.72	53.1
Zm00001d031086_P001	Maize	plastid	68.33	53.08
VIT_10s0003g03750.t01	Wine grape	plastid	71.72	52.4
Bra008358.1-P	Field mustard	plastid	68.78	51.79
KRH58642	Soybean	plastid	68.55	51.53
TraesCS5A01G374000.1	Wheat	plastid	68.78	51.44
TraesCS5D01G383500.1	Wheat	plastid	69.23	51.43
GSMUA_Achr4P22870_001	Banana	plastid	69.68	51.25
Bra035033.1-P	Field mustard	plastid	69.68	51.16
TraesCS5B01G375900.1	Wheat	plastid	68.78	51.09
KRH42549	Soybean	plastid	67.87	50.93
Os03t0645900-00	Rice	plastid	69.46	50.49
Zm00001d033222_P001	Maize	extracellular	68.55	50.17
GSMUA_Achr6P31180_001	Banana	plastid	68.33	50.08
HORVU5Hr1G054970.1	Barley	cytosol	68.78	50.0
HORVU5Hr1G008050.1	Barley	plastid	68.55	49.92
EER93751	Sorghum	plastid	68.78	49.75
GSMUA_Achr2P12950_001	Banana	plastid	66.29	49.75
GSMUA_Achr7P01250_001	Banana	plastid	67.65	49.59
TraesCS5B01G029300.1	Wheat	plastid	68.78	49.51
Zm00001d041319_P001	Maize	plastid	67.65	49.5
GSMUA_Achr4P31460_001	Banana	plastid	67.42	49.42
Zm00001d013689_P001	Maize	plastid	66.97	49.25
OQU88453	Sorghum	plastid	63.57	49.04
TraesCS5D01G038800.1	Wheat	plastid	68.1	48.94
GSMUA_Achr5P02570_001	Banana	plastid	67.42	48.85
Zm00001d018819_P001	Maize	plastid	63.12	48.69
Zm00001d007876_P001	Maize	plastid	63.12	48.52
Os07t0154100-01	Rice	plastid	62.67	47.59
TraesCS2D01G251600.1	Wheat	plastid	62.22	47.25
HORVU5Hr1G092850.2	Barley	plastid	68.78	47.2
HORVU5Hr1G044510.1	Barley	cytosol	64.03	47.17
TraesCS2B01G268400.1	Wheat	plastid	62.9	46.64
TraesCS2A01G250600.1	Wheat	plastid	60.63	45.19
Zm00001d023458_P001	Maize	cytosol	14.25	44.68
Bra015002.1-P	Field mustard	plastid	58.14	43.93
Zm00001d042076_P001	Maize	cytosol, plastid	39.59	41.67
Zm00001d000095_P001	Maize	cytosol	14.93	40.24
Zm00001d022623_P001	Maize	cytosol	33.48	39.68
Bra013378.1-P	Field mustard	peroxisome	38.01	33.33
Zm00001d035724_P001	Maize	plastid	44.57	31.02
Bra020970.1-P	Field mustard	plastid	36.88	28.75
Bra040449.1-P	Field mustard	cytosol	32.81	26.51
Bra007826.1-P	Field mustard	plastid	33.94	25.04
Zm00001d000157_P001	Maize	cytosol	5.88	24.76
Bra007825.1-P	Field mustard	plastid	30.32	23.3
Zm00001d027592_P001	Maize	mitochondrion	21.72	22.54
Zm00001d019813_P001	Maize	plastid	5.43	12.7
Zm00001d009286_P001	Maize	plastid	5.43	9.52
Zm00001d033377_P001	Maize	plastid	5.43	8.45

Protein Annotations

EnsemblPlants:Bra012603.1	EnsemblPlants:Bra012603.1-P	EnsemblPlantsGene:Bra012603	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
ncoils:Coil	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	SEG:seg	UniParc:UPI0002540A81
UniProt:M4D7Z3	MapMan:11.1.1.4	:	:	:	:

Description

AT4G18350 (E=3e-207) NCED2, ATNCED2 | NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA03:+:23280442..23281770

Molecular Weight (calculated)

49407.9 Da

IEP (calculated)

4.979

GRAVY (calculated)

-0.229

Length

442 amino acids

Sequence
(BLAST)

001: MFEPIAGHHL FDGDGMVHAV KITNGSASYA CRFTKTERLI QEKRLGRPVF PKAIGELHGH SGIARLMLFY ARGLCGLVNN QNGVGVANAG LVYFNNRLLA
101: MSEDDLPYQL KITQTGDLQT VGRYDFDGQL KSSMIAHPKL DPVTKELHAL SYDVVKKPYL KYFRFSPDGV KSPELEIPLE TPTMIHDFAI TENFVVIPDQ
201: QVVFKLGEMI AGNSPVVFDG EKVSRLGIMP KDATEASEII WVNSPETFCF HLWNAWESPE TEEVVVIGSC MSPADSIFNE RDESLRSVLT EIRINLRTRE
301: ATRRALLEDD VNLEIGMVNR NRLGRKTRFA FLAIADPWPK VSGFAKVDLF TGEIEKYIYG GEKYGGEPFF LPSGSFDGNG GENEDDGYIF SHVHDEEKET
401: SELQIINAVN LKLEATIKLP SRVPYGFHGT FVDSSELVDQ SL

Best Arabidopsis Sequence Match ( AT4G18350.1 )
(BLAST)

001: MVSLLTMPMS GGIKTWPQAQ IDLGFRPIKR QPKVIKCTVQ IDVTELTKKR QLFTPRTTAT PPQHNPLRLN IFQKAAAIAI DAAERALISH EQDSPLPKTA
101: DPRVQIAGNY SPVPESSVRR NLTVEGTIPD CIDGVYIRNG ANPMFEPTAG HHLFDGDGMV HAVKITNGSA SYACRFTKTE RLVQEKRLGR PVFPKAIGEL
201: HGHSGIARLM LFYARGLCGL INNQNGVGVA NAGLVYFNNR LLAMSEDDLP YQLKITQTGD LQTVGRYDFD GQLKSAMIAH PKLDPVTKEL HALSYDVVKK
301: PYLKYFRFSP DGVKSPELEI PLETPTMIHD FAITENFVVI PDQQVVFKLG EMISGKSPVV FDGEKVSRLG IMPKDATEAS QIIWVNSPET FCFHLWNAWE
401: SPETEEIVVI GSCMSPADSI FNERDESLRS VLSEIRINLR TRKTTRRSLL VNEDVNLEIG MVNRNRLGRK TRFAFLAIAY PWPKVSGFAK VDLCTGEMKK
501: YIYGGEKYGG EPFFLPGNSG NGEENEDDGY IFCHVHDEET KTSELQIINA VNLKLEATIK LPSRVPYGFH GTFVDSNELV DQL

Arabidopsis Description

NCED29-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49505]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.