Factsheet for TraesCS2B01G268400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G339100.1
TraesCS3B01G370800.2
TraesCS3D01G332700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	TraesCS3A01G339100.1	AT5G17790.1	15340011
AT1G30100.1	TraesCS3B01G370800.2	AT5G17790.1	15340011
AT1G30100.1	TraesCS3D01G332700.1	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G251600.1	Wheat	plastid	93.12	95.36
TraesCS2A01G250600.1	Wheat	plastid	92.11	92.58
Zm00001d018819_P001	Maize	plastid	77.52	80.63
OQU88453	Sorghum	plastid	76.85	79.93
Zm00001d007876_P001	Maize	plastid	76.68	79.48
Os07t0154100-01	Rice	plastid	77.01	78.87
Bra001552.1-P	Field mustard	cytosol	44.97	67.68
CDX82482	Canola	cytosol	44.8	67.42
CDY57471	Canola	cytosol	44.63	67.17
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	56.54	66.6
CDX98456	Canola	cytosol	27.85	65.1
TraesCS5B01G375900.1	Wheat	plastid	63.26	63.36
Bra012603.1-P	Field mustard	cytosol	46.64	62.9
CDY39117	Canola	mitochondrion	58.05	62.57
GSMUA_Achr2P12950_001	Banana	plastid	61.74	62.48
GSMUA_Achr4P22870_001	Banana	plastid	61.91	61.4
GSMUA_Achr7P01250_001	Banana	plastid	61.74	61.03
TraesCS5B01G029300.1	Wheat	plastid	62.58	60.75
GSMUA_Achr5P02570_001	Banana	plastid	62.08	60.66
GSMUA_Achr6P31180_001	Banana	plastid	60.91	60.2
VIT_19s0093g00550.t01	Wine grape	plastid	60.74	59.44
GSMUA_Achr4P31460_001	Banana	plastid	59.4	58.71
CDY33218	Canola	plastid	58.89	58.7
Bra008358.1-P	Field mustard	plastid	57.72	58.6
Zm00001d042076_P001	Maize	cytosol, plastid	41.28	58.57
Bra021558.1-P	Field mustard	plastid	58.72	58.53
Bra027336.1-P	Field mustard	plastid	58.56	58.46
CDX98455	Canola	plastid	58.56	58.46
CDX97576	Canola	plastid	58.56	58.46
Solyc07g056570.1.1	Tomato	plastid	59.06	58.18
AT3G14440.1	Thale cress	plastid	58.39	58.1
CDY52448	Canola	plastid	58.56	57.97
PGSC0003DMT400039054	Potato	plastid	56.38	57.93
Solyc08g016720.1.1	Tomato	plastid	56.38	57.83
CDX88443	Canola	plastid	58.39	57.81
Bra035033.1-P	Field mustard	plastid	58.39	57.81
VIT_10s0003g03750.t01	Wine grape	plastid	58.56	57.69
Bra032359.1-P	Field mustard	plastid	56.21	56.97
CDY26294	Canola	plastid	56.21	56.88
AT1G30100.1	Thale cress	plastid	56.04	56.71
CDY61838	Canola	plastid	56.04	56.71
Bra013298.1-P	Field mustard	plastid	54.53	55.94
CDX99475	Canola	plastid	54.19	55.59
CDX78842	Canola	plastid	54.19	55.59
CDY55629	Canola	cytosol, plastid	54.19	55.4
CDY01534	Canola	cytosol, plastid	54.03	55.23
AT4G18350.1	Thale cress	cytosol, plastid	54.03	55.23
Zm00001d022623_P001	Maize	cytosol	34.23	54.69
AT1G78390.1	Thale cress	cytosol, plastid	59.23	53.73
CDX98457	Canola	plastid	27.52	52.06
KRH45171	Soybean	plastid	11.91	43.03
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	32.55	35.4
TraesCS6B01G298800.1	Wheat	plastid	37.42	34.68
TraesCS5B01G001800.1	Wheat	cytosol	31.38	34.63
TraesCS4B01G300700.1	Wheat	plastid	24.16	23.84
TraesCS5B01G180500.1	Wheat	cytosol	23.99	21.31

Protein Annotations

EnsemblPlants:TraesCS2B01G268400.1	EnsemblPlantsGene:TraesCS2B01G268400	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF49	PFAM:PF03055
SEG:seg	MapMan:11.1.1.4	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:363341361..363343965

Molecular Weight (calculated)

64742.9 Da

IEP (calculated)

7.115

GRAVY (calculated)

-0.288

Length

596 amino acids

Sequence
(BLAST)

001: MASSITAPAA APGSVVRPPA KVRPRPPPSR FNPNDPRKNA DGSAVVTWKG PMRAAPARKK WPNPFQRMVA AALNAVEDRL VAGILERKHP LPRTADPAVQ
101: IAGNYAPVGE LPPAGPEDLP VVSGRVPACL QGVYVRNGAN PLHAPRAGHH LFDGDGMVHA VRLGGGRAES YACRFTKTAR LRQEREIGRP IFPKAIGELH
201: GHSGVARLAL FGARSLCGVV DASQGIGVAN AGLVYHDGRL LAMSEDDLPY HVRVTPDGDL ETVGRYDFNG QLDGAMIAHP KLDPATGELF ALSYNVVSKP
301: YLKYFYFTAD GHKSHDVDIP VDEPTMIHDF AVTENYAVVP DQQIVFKLRE MVLGGSPVVY DKSKTARFGV VPKRAANASE LRWVEVPDCF CFHLWNAWED
401: EATGEIVVIG SCMTPPDAVF NESPDQDQSF RSVLSEIRLD PRTGTSRRRA VLREADQVNL EAGMVNRQLV GRKTRYAYLS IAEPWPRVSG FAKVDLESGT
501: VEKRDTFASI ITYGEGRYGG EPCFVPHADG SGAEDDGYVL CFVHDDSRGS ADGTLSELLV VNARDMRSEA TVKLPGRVPY GFHGTVISAT ELQRQA

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.