Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G186900.1 | Wheat | cytosol | 90.16 | 93.51 |
| HORVU5Hr1G055740.1 | Barley | plasma membrane | 88.38 | 92.22 |
| OQU89281 | Sorghum | cytosol | 53.95 | 73.13 |
| Os09t0321200-00 | Rice | plastid | 61.55 | 72.46 |
| OQU89285 | Sorghum | plastid | 64.38 | 70.7 |
| Zm00001d020069_P002 | Maize | plastid | 54.84 | 65.83 |
| TraesCS4B01G300700.1 | Wheat | plastid | 50.07 | 55.63 |
| TraesCS5B01G002600.2 | Wheat | cytosol, golgi, plastid | 23.55 | 28.83 |
| TraesCS5B01G001800.1 | Wheat | cytosol | 22.95 | 28.52 |
| TraesCS5B01G375900.1 | Wheat | plastid | 23.4 | 26.39 |
| TraesCS5B01G029300.1 | Wheat | plastid | 23.25 | 25.41 |
| TraesCS2B01G268400.1 | Wheat | plastid | 21.31 | 23.99 |
| TraesCS6B01G298800.1 | Wheat | plastid | 22.35 | 23.33 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G180500.1 | EnsemblPlantsGene:TraesCS5B01G180500 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016702 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF30 | PFAM:PF03055 |
| SEG:seg | MapMan:50.1.12 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:328196888..328200871
Molecular Weight (calculated)
74478.3 Da
IEP (calculated)
6.432
GRAVY (calculated)
-0.303
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MWPCRIFQDA PGVCCPLSDP ARNSIQVAIN GGKSSSSILM IAGGSGFVTI RMLKTTTSPP HALRPSRAYY RPAFSLSATT SSSSLTSNPK KSSIQELRRQ
101: LSSRIDDASR VLKKAPQRLL DAIVDSTFKF THQALLPSES NFAPVDEIGG SIEIFQIEGE IPEDFPEGVY IRNGSNPLFG ALHSTVSVFG ESSEIWVEGE
201: GMLHALYFTK TGSASSWSVS YDNRYVQSET LKIEQDRQKP CFLPAIEGDS AAIIAAYIFN YLRFGKVNKN ITNTNVFEHA GRVYAVAESH QPQEICIQNL
301: ETGNTWDIGG EWDRPFTAHP KVAPGSGELV IFGSDAKKPF LVVGVVSDDG TKLKHKVDLK LNRSTLCHDI GVTLKYNIII DIPLTIDIGR LTTGGQLIEF
401: EKEGYARIGI MPRYGDAESV MWFDVEPFCM FHLINCFEEG DEVVVQGLRS ADSVIPGPRL NKQDILPERS ELKKDGKAMK QGINEKLFSR LFEWRLNLKT
501: KTVSGEYLTG TECSLEFPMI NNHYTGVRHS YGYAQIVDSL TRSAGSSEKV LPKYGGFAKL CLEERENTET SAEDLIKMEI HRLSEDEFCS GASFVPRVGG
601: SHEDDGWIIS FVHNERTNTS QVHIIDTQKF EGAPVAKITL PQRVPYGFHG TFVHNNIHGH VNTRSEKNWT A
101: LSSRIDDASR VLKKAPQRLL DAIVDSTFKF THQALLPSES NFAPVDEIGG SIEIFQIEGE IPEDFPEGVY IRNGSNPLFG ALHSTVSVFG ESSEIWVEGE
201: GMLHALYFTK TGSASSWSVS YDNRYVQSET LKIEQDRQKP CFLPAIEGDS AAIIAAYIFN YLRFGKVNKN ITNTNVFEHA GRVYAVAESH QPQEICIQNL
301: ETGNTWDIGG EWDRPFTAHP KVAPGSGELV IFGSDAKKPF LVVGVVSDDG TKLKHKVDLK LNRSTLCHDI GVTLKYNIII DIPLTIDIGR LTTGGQLIEF
401: EKEGYARIGI MPRYGDAESV MWFDVEPFCM FHLINCFEEG DEVVVQGLRS ADSVIPGPRL NKQDILPERS ELKKDGKAMK QGINEKLFSR LFEWRLNLKT
501: KTVSGEYLTG TECSLEFPMI NNHYTGVRHS YGYAQIVDSL TRSAGSSEKV LPKYGGFAKL CLEERENTET SAEDLIKMEI HRLSEDEFCS GASFVPRVGG
601: SHEDDGWIIS FVHNERTNTS QVHIIDTQKF EGAPVAKITL PQRVPYGFHG TFVHNNIHGH VNTRSEKNWT A
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.