Factsheet for TraesCS5B01G375900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G339100.1
TraesCS3B01G370800.2
TraesCS3D01G332700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	TraesCS3A01G339100.1	AT5G17790.1	15340011
AT1G30100.1	TraesCS3B01G370800.2	AT5G17790.1	15340011
AT1G30100.1	TraesCS3D01G332700.1	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G383500.1	Wheat	plastid	97.98	97.98
TraesCS5A01G374000.1	Wheat	plastid	97.31	97.97
HORVU5Hr1G092850.2	Barley	plastid	97.31	89.91
HORVU5Hr1G054970.1	Barley	cytosol	87.56	85.69
HORVU5Hr1G044510.1	Barley	cytosol	84.71	84.0
Zm00001d023690_P001	Maize	cytosol	18.49	83.97
Zm00001d027690_P001	Maize	cytosol	10.76	83.12
Os03t0645900-00	Rice	plastid	84.54	82.73
EER93751	Sorghum	plastid	84.2	82.0
Zm00001d008638_P001	Maize	cytosol	11.26	81.71
Zm00001d033222_P001	Maize	extracellular	82.86	81.62
Zm00001d013689_P001	Maize	plastid	80.67	79.87
TraesCS5B01G029300.1	Wheat	plastid	77.82	75.41
CDX82482	Canola	cytosol	47.73	71.72
Bra001552.1-P	Field mustard	cytosol	47.73	71.72
CDX98456	Canola	cytosol	30.42	70.98
CDY57471	Canola	cytosol	47.06	70.71
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	59.5	69.96
Bra012603.1-P	Field mustard	cytosol	51.09	68.78
CDY39117	Canola	mitochondrion	61.18	65.82
GSMUA_Achr4P22870_001	Banana	plastid	65.88	65.22
GSMUA_Achr2P12950_001	Banana	plastid	64.2	64.86
GSMUA_Achr5P02570_001	Banana	plastid	65.88	64.26
GSMUA_Achr6P31180_001	Banana	plastid	64.37	63.52
GSMUA_Achr7P01250_001	Banana	plastid	64.37	63.52
PGSC0003DMT400039054	Potato	plastid	61.68	63.28
TraesCS2B01G268400.1	Wheat	plastid	63.36	63.26
Solyc08g016720.1.1	Tomato	plastid	61.51	62.99
Bra027336.1-P	Field mustard	plastid	63.19	62.98
Bra021558.1-P	Field mustard	plastid	63.19	62.88
GSMUA_Achr4P31460_001	Banana	plastid	63.7	62.85
CDX98455	Canola	plastid	62.86	62.65
CDX97576	Canola	plastid	62.69	62.48
AT3G14440.1	Thale cress	plastid	62.69	62.27
CDY33218	Canola	plastid	62.52	62.21
VIT_19s0093g00550.t01	Wine grape	plastid	63.53	62.07
VIT_10s0003g03750.t01	Wine grape	plastid	62.35	61.32
CDX88443	Canola	plastid	61.85	61.13
Bra032359.1-P	Field mustard	plastid	60.34	61.05
CDY52448	Canola	plastid	61.68	60.96
Bra035033.1-P	Field mustard	plastid	61.51	60.8
AT1G30100.1	Thale cress	plastid	60.17	60.78
CDY26294	Canola	plastid	60.17	60.78
Solyc07g056570.1.1	Tomato	plastid	61.68	60.66
Bra008358.1-P	Field mustard	plastid	59.83	60.65
CDY61838	Canola	plastid	59.83	60.44
Bra013298.1-P	Field mustard	plastid	58.82	60.24
CDX99475	Canola	plastid	58.49	59.9
CDX78842	Canola	plastid	58.49	59.9
CDY55629	Canola	cytosol, plastid	58.49	59.69
AT4G18350.1	Thale cress	cytosol, plastid	58.32	59.52
CDY01534	Canola	cytosol, plastid	58.15	59.35
AT1G78390.1	Thale cress	cytosol, plastid	62.35	56.47
CDX98457	Canola	plastid	28.91	54.6
KRH45171	Soybean	plastid	10.76	38.79
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	34.12	37.04
TraesCS5B01G001800.1	Wheat	cytosol	33.28	36.67
TraesCS6B01G298800.1	Wheat	plastid	37.98	35.15
TraesCS4B01G300700.1	Wheat	plastid	25.88	25.5
TraesCS5B01G180500.1	Wheat	cytosol	26.39	23.4

Protein Annotations

EnsemblPlants:TraesCS5B01G375900.1	EnsemblPlantsGene:TraesCS5B01G375900	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055
SEG:seg	MapMan:11.1.1.4	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:553725094..553726881

Molecular Weight (calculated)

64882.0 Da

IEP (calculated)

5.593

GRAVY (calculated)

-0.195

Length

595 amino acids

Sequence
(BLAST)

001: MQTLTASTSV SSIQRHRPRP AGRSSFSARA VSSAPRAPSG AARVPAPSRF VRGADAAPAK PLIAVPKAPA VERQEKKLNF FQRAAATALD AFEEGFVANV
101: LERPHGLSRT VDPAVQIAGN FAPVGETPPV HALPVTGRIP PFINGVYARN GANPHFDPVA GHHLFDGDGM VHALRIRNGV AETYASRFTE TERLQQERAL
201: GRPMFPKAIG ELHGHSGIAR LALFYARAAC GLIDPSRGTG VANAGLVYFN GHLLAMSEDD IPYHVRVTDD GDLQTVGRYD FDGQLECPMI AHPKLDPATG
301: ELHALSYDVI KKPYLKYFYF KADGTKSADV EIPLDQPTMI HDFAITENYV VVPDHQVVFK LQEMLRGGSP VVLDKEKTSR FGVLPKCAAD SSEMVWVDVP
401: DCFCFHLWNA WEEEETDEVV VIGSCMTPAD SIFNESDECL ESVLTEIRLN TRTGESTRRP ILALSEQVNL EVGMVNSNLL GRKTRYAYLA VAEPWPKVSG
501: FAKVDLATGE LTKFEYGEGR FGGEPCFVPM DPATSRGEDD GYILTFVHDE AAGTSELLVV NAADMRLEAT IQLPSRVPYG FHGTFVTGKE LESQA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.