Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G004300.1 | Wheat | mitochondrion | 90.89 | 93.21 |
| Os08t0369800-01 | Rice | plastid | 35.26 | 55.76 |
| TraesCS5B01G180500.1 | Wheat | cytosol | 55.63 | 50.07 |
| TraesCS5B01G002600.2 | Wheat | cytosol, golgi, plastid | 26.82 | 29.56 |
| TraesCS5B01G001800.1 | Wheat | cytosol | 25.66 | 28.7 |
| TraesCS5B01G375900.1 | Wheat | plastid | 25.5 | 25.88 |
| TraesCS2B01G268400.1 | Wheat | plastid | 23.84 | 24.16 |
| TraesCS5B01G029300.1 | Wheat | plastid | 24.5 | 24.1 |
| TraesCS6B01G298800.1 | Wheat | plastid | 25.33 | 23.79 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G300700.1 | EnsemblPlantsGene:TraesCS4B01G300700 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016702 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF83 | PFAM:PF03055 |
| MapMan:50.1.12 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:587009511..587020041
Molecular Weight (calculated)
67231.5 Da
IEP (calculated)
8.293
GRAVY (calculated)
-0.235
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTSIHGCSL QPSMCAGRRQ PSSVSASATS LPRQIISAAK ELHQQFALRI GDASSNALNY ASQRLLDAFV GTIFTLSRQP LRPTEGNFAP VKEIGDMREI
101: FDIAGEIPED FPEGVYIRNG SNPLFGALHS STSIFGKSHD IWVEGEGMLH ALYFTKSKNN TWLIKYTNRY VQSDTFRVEK GLKKPCFLPA SDGDPLAMLI
201: ADTLNILRFG KAFKNMSNTS VFEHAGRVFS AAENDNPHEI DLCSLGTLGS WNVDGGWKMP FTAHPKVIPG TGELVIFGFN LDAPFLTVGV VSADGNKLQQ
301: KVALELDRCT YCHEIGVTTM YNIILDSPLT INKERLLKGA PLIEFEKDSY ARIGVMPRYG DANSTAWFYV QPFCTIHLVN CFEEEDEVVV RGFHVPGSII
401: LGPRIKCNQG LTEECFSRLY EWRLNLKTRA VVGKYLTGKE VALEFPVMND KYVGLPHKYA YAQVADSPAN LAGGPGIVRP KFGGFAKFCL HEKEDATTKN
501: KGQEDHIKVK YHHLARNQFC SGATFVPKVN GTNEDDGWIV SFVHDEGTNK SKVHIINTQT FEYDPIAKIT LPQRVPYGFH GAFVSKMTLR RHYGFHRRLV
601: SKAA
101: FDIAGEIPED FPEGVYIRNG SNPLFGALHS STSIFGKSHD IWVEGEGMLH ALYFTKSKNN TWLIKYTNRY VQSDTFRVEK GLKKPCFLPA SDGDPLAMLI
201: ADTLNILRFG KAFKNMSNTS VFEHAGRVFS AAENDNPHEI DLCSLGTLGS WNVDGGWKMP FTAHPKVIPG TGELVIFGFN LDAPFLTVGV VSADGNKLQQ
301: KVALELDRCT YCHEIGVTTM YNIILDSPLT INKERLLKGA PLIEFEKDSY ARIGVMPRYG DANSTAWFYV QPFCTIHLVN CFEEEDEVVV RGFHVPGSII
401: LGPRIKCNQG LTEECFSRLY EWRLNLKTRA VVGKYLTGKE VALEFPVMND KYVGLPHKYA YAQVADSPAN LAGGPGIVRP KFGGFAKFCL HEKEDATTKN
501: KGQEDHIKVK YHHLARNQFC SGATFVPKVN GTNEDDGWIV SFVHDEGTNK SKVHIINTQT FEYDPIAKIT LPQRVPYGFH GAFVSKMTLR RHYGFHRRLV
601: SKAA
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.