Factsheet for HORVU5Hr1G054970.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G080150.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	HORVU3Hr1G080150.3	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G374000.1	Wheat	plastid	85.69	88.16
TraesCS5B01G375900.1	Wheat	plastid	85.69	87.56
TraesCS5D01G383500.1	Wheat	plastid	85.53	87.39
Zm00001d023690_P001	Maize	cytosol	18.09	83.97
HORVU5Hr1G044510.1	Barley	cytosol	82.4	83.5
Zm00001d027690_P001	Maize	cytosol	10.36	81.82
Zm00001d008638_P001	Maize	cytosol	11.02	81.71
HORVU5Hr1G092850.2	Barley	plastid	86.35	81.52
Os03t0645900-00	Rice	plastid	78.29	78.29
EER93751	Sorghum	plastid	77.3	76.92
Zm00001d033222_P001	Maize	extracellular	76.15	76.66
Zm00001d013689_P001	Maize	plastid	74.51	75.37
HORVU5Hr1G008050.1	Barley	plastid	72.53	72.65
CDX82482	Canola	cytosol	46.71	71.72
Bra001552.1-P	Field mustard	cytosol	46.71	71.72
CDX98456	Canola	cytosol	29.77	70.98
CDY57471	Canola	cytosol	46.05	70.71
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	58.55	70.36
Bra012603.1-P	Field mustard	cytosol	50.0	68.78
CDY39117	Canola	mitochondrion	59.7	65.64
GSMUA_Achr4P22870_001	Banana	plastid	63.16	63.89
GSMUA_Achr2P12950_001	Banana	plastid	61.68	63.67
GSMUA_Achr5P02570_001	Banana	plastid	63.49	63.28
GSMUA_Achr7P01250_001	Banana	plastid	62.34	62.85
GSMUA_Achr6P31180_001	Banana	plastid	61.84	62.35
GSMUA_Achr4P31460_001	Banana	plastid	61.18	61.69
PGSC0003DMT400039054	Potato	plastid	58.72	61.55
Solyc08g016720.1.1	Tomato	plastid	58.55	61.27
Bra027336.1-P	Field mustard	plastid	60.03	61.14
Bra021558.1-P	Field mustard	plastid	60.03	61.04
CDX98455	Canola	plastid	59.7	60.8
CDX97576	Canola	plastid	59.54	60.64
VIT_19s0093g00550.t01	Wine grape	plastid	60.69	60.59
CDY33218	Canola	plastid	59.38	60.37
AT3G14440.1	Thale cress	plastid	59.21	60.1
CDX88443	Canola	plastid	59.21	59.8
Solyc07g056570.1.1	Tomato	plastid	59.38	59.67
CDY52448	Canola	plastid	59.05	59.63
Bra013298.1-P	Field mustard	plastid	56.91	59.55
Bra032359.1-P	Field mustard	plastid	57.57	59.52
VIT_10s0003g03750.t01	Wine grape	plastid	59.21	59.5
Bra035033.1-P	Field mustard	plastid	58.88	59.47
CDX99475	Canola	plastid	56.74	59.38
Bra008358.1-P	Field mustard	plastid	57.24	59.28
CDY26294	Canola	plastid	57.4	59.25
CDX78842	Canola	plastid	56.58	59.21
AT1G30100.1	Thale cress	plastid	57.24	59.08
CDY55629	Canola	cytosol, plastid	56.41	58.83
CDY61838	Canola	plastid	56.91	58.74
AT4G18350.1	Thale cress	cytosol, plastid	56.25	58.66
CDY01534	Canola	cytosol, plastid	56.09	58.49
AT1G78390.1	Thale cress	cytosol, plastid	59.7	55.25
CDX98457	Canola	plastid	26.48	51.11
KRH45171	Soybean	plastid	10.03	36.97
HORVU5Hr1G000320.9	Barley	plastid	33.06	35.45
HORVU4Hr1G006300.1	Barley	cytosol	31.91	34.95
HORVU6Hr1G068720.1	Barley	plastid	35.69	33.75
HORVU1Hr1G000550.2	Barley	cytosol	25.66	26.62
HORVU3Hr1G108100.2	Barley	plasma membrane, plastid	24.18	24.66
HORVU5Hr1G055740.1	Barley	plasma membrane	24.34	23.02

Protein Annotations

EnsemblPlants:HORVU5Hr1G054970.1	EnsemblPlantsGene:HORVU5Hr1G054970	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	ncoils:Coil
PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	SEG:seg	UniParc:UPI000B461F6F	UniProt:A0A287R9Q6
MapMan:11.1.1.4	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:430873572..430875399

Molecular Weight (calculated)

57728.4 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.150

Length

608 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVERQEKK LNFFQRAAAT
101: ALDAFEEGFV ANVLERPHGL SRTVDPAVQI AGNFAPVGET PPVQALPVTG RIPPFINGVY ARNGANPHFD PVAGHHLFDG DGMVHALRIR NGVAETYASR
201: FTETERLQQE RALGRPMFPK AIGELHGHSG IARLALFYAR AACGLIDPSR GTGVANAGLV YFNGHLLAMS EDDIPYHVRV TDDGDLQTVG RYDFDGQLEC
301: PMIAHPKLDP ATGELHALSY DVIKKPYLKY FYFAADGTKS ADVEIPLDQP TMIHDFAITE NYVVVPDHQV VFKLQEMLRG GSPVVLDKEK TSRFGVLPKC
401: AADASEMVWV DVPDCFCFHL WNAWEEEETD EVVVIGSCMT PADSIFNESD ECLESVLTEI RLNTRTGEST RRPILALSEQ VNLEVGMVNS NLLGRKTRYA
501: YLAVAEPWPK VSGFAKVDLA TGELTKFEYG EGRFGGEPCF VPMDPATSRG EDDGYILTFV HDEAAGTSEL LVVNAADMRL EATIQLPSRV PYGFHGTFIT
601: GKELESQA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.