Factsheet for HORVU5Hr1G092850.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G080150.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	HORVU3Hr1G080150.3	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G374000.1	Wheat	plastid	89.6	97.63
TraesCS5B01G375900.1	Wheat	plastid	89.91	97.31
TraesCS5D01G383500.1	Wheat	plastid	89.44	96.81
HORVU5Hr1G054970.1	Barley	cytosol	81.52	86.35
HORVU5Hr1G044510.1	Barley	cytosol	79.04	84.83
Zm00001d023690_P001	Maize	cytosol	17.08	83.97
Os03t0645900-00	Rice	plastid	78.88	83.55
EER93751	Sorghum	plastid	78.11	82.32
Zm00001d033222_P001	Maize	extracellular	76.86	81.95
Zm00001d027690_P001	Maize	cytosol	9.78	81.82
Zm00001d008638_P001	Maize	cytosol	10.4	81.71
Zm00001d013689_P001	Maize	plastid	74.84	80.2
HORVU5Hr1G008050.1	Barley	plastid	71.58	75.95
CDX82482	Canola	cytosol	44.1	71.72
Bra001552.1-P	Field mustard	cytosol	44.1	71.72
CDX98456	Canola	cytosol	28.11	70.98
CDY57471	Canola	cytosol	43.48	70.71
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	55.28	70.36
Bra012603.1-P	Field mustard	cytosol	47.2	68.78
CDY39117	Canola	mitochondrion	56.68	66.0
GSMUA_Achr4P22870_001	Banana	plastid	60.56	64.89
GSMUA_Achr2P12950_001	Banana	plastid	59.32	64.86
GSMUA_Achr5P02570_001	Banana	plastid	61.02	64.43
GSMUA_Achr7P01250_001	Banana	plastid	59.47	63.52
Bra027336.1-P	Field mustard	plastid	58.85	63.48
GSMUA_Achr6P31180_001	Banana	plastid	59.32	63.35
Bra021558.1-P	Field mustard	plastid	58.7	63.21
CDX98455	Canola	plastid	58.54	63.15
PGSC0003DMT400039054	Potato	plastid	56.83	63.1
CDX97576	Canola	plastid	58.39	62.98
GSMUA_Achr4P31460_001	Banana	plastid	58.85	62.85
Solyc08g016720.1.1	Tomato	plastid	56.68	62.82
AT3G14440.1	Thale cress	plastid	58.23	62.6
CDY33218	Canola	plastid	58.07	62.54
VIT_19s0093g00550.t01	Wine grape	plastid	58.7	62.07
VIT_10s0003g03750.t01	Wine grape	plastid	57.61	61.32
CDX88443	Canola	plastid	57.3	61.3
CDY52448	Canola	plastid	56.99	60.96
Bra032359.1-P	Field mustard	plastid	55.59	60.88
Bra035033.1-P	Field mustard	plastid	56.83	60.8
Solyc07g056570.1.1	Tomato	plastid	56.99	60.66
Bra008358.1-P	Field mustard	plastid	55.28	60.65
CDY26294	Canola	plastid	55.43	60.61
AT1G30100.1	Thale cress	plastid	55.43	60.61
Bra013298.1-P	Field mustard	plastid	54.66	60.59
CDY61838	Canola	plastid	55.12	60.27
CDX78842	Canola	plastid	54.35	60.24
CDX99475	Canola	plastid	54.35	60.24
CDY55629	Canola	cytosol, plastid	54.04	59.69
AT4G18350.1	Thale cress	cytosol, plastid	53.88	59.52
CDY01534	Canola	cytosol, plastid	53.73	59.35
AT1G78390.1	Thale cress	cytosol, plastid	59.47	58.3
CDX98457	Canola	plastid	27.17	55.56
KRH45171	Soybean	plastid	9.94	38.79
HORVU5Hr1G000320.9	Barley	plastid	31.52	35.8
HORVU4Hr1G006300.1	Barley	cytosol	30.43	35.32
HORVU6Hr1G068720.1	Barley	plastid	34.94	34.99
HORVU1Hr1G000550.2	Barley	cytosol	24.53	26.96
HORVU3Hr1G108100.2	Barley	plasma membrane, plastid	23.14	25.0
HORVU5Hr1G055740.1	Barley	plasma membrane	23.6	23.64

Protein Annotations

EnsemblPlants:HORVU5Hr1G092850.2	EnsemblPlantsGene:HORVU5Hr1G092850	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	SEG:seg	UniParc:UPI000B46A237	UniProt:A0A287S9D4
MapMan:11.1.1.4	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:589662436..589664852

Molecular Weight (calculated)

70048.0 Da

IEP (calculated)

5.657

GRAVY (calculated)

-0.230

Length

644 amino acids

Sequence
(BLAST)

001: INHPSVHPDL ITPATHALPP PSLSRNNKTH ANSAQTPPDT LAVDPPPPPP VQMQTLTASS SVSSIQRHRP HPAGRRSSSV TFSARAVSSA PRAPAPSRFV
101: RGADAAPAKP LIAVPKPPAV ERQEKKLNFF QRAAATALDA FEEGFVANVL ERPHGLSRTV DPAVQIAGNF APVGETPPVQ ALPVTGRIPP FINGVYARNG
201: ANPHFDPVAG HHLFDGDGMV HALRIRNGVA ETYASRFTET ERLQQERALG RPMFPKAIGE LHGHSGIARL ALFYARAACG LIDPSRGTGV ANAGLVYFNG
301: HLLAMSEDDI PYHVRVTDDG DLQTVGRYDF DGQLECPMIA HPKLDPATGE LHALSYDVIK KPYLKYFYFA ADGTKSADVE IPLDQPTMIH DFAITENYVV
401: VPDHQVVFKL QEMLRGGSPV VLDKEKTSRF GVLPKCAADA SEMVWVDVPD CFCFHLWNAW EEEETDEVVV IGSCMTPADS IFNESDECLE SVLTEIRLNT
501: RTGESTRRPI LALSEQVNLE VGMVNSNLLG RKTRYAYLAV AEPWPKVSGF AKVDLATGEL TKFEYGEGRF GGEPCFVPMD PATSRGEDDG YILTFVHDEA
601: AGTSELLVVN AADMRLEATI QLPSRVPYGF HGTFITGKEL ESQA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.