CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55629	Canola	cytosol, plastid	98.11	98.11
Bra012603.1-P	Field mustard	cytosol	73.76	97.29
CDX99475	Canola	plastid	90.05	90.36
AT4G18350.1	Thale cress	cytosol, plastid	90.22	90.22
CDX78842	Canola	plastid	88.85	89.16
CDX82482	Canola	cytosol	49.4	72.73
CDY57471	Canola	cytosol	48.89	71.97
CDX98456	Canola	cytosol	30.36	69.41
Zm00001d027690_P001	Maize	cytosol	9.09	68.83
Zm00001d023690_P001	Maize	cytosol	15.44	68.7
Zm00001d008638_P001	Maize	cytosol	9.61	68.29
CDY39117	Canola	mitochondrion	63.46	66.91
CDY26294	Canola	plastid	67.24	66.55
CDY61838	Canola	plastid	67.07	66.38
PGSC0003DMT400039054	Potato	plastid	64.32	64.66
Solyc08g016720.1.1	Tomato	plastid	63.98	64.2
Os12t0617400-01	Rice	cytosol	30.87	63.6
VIT_10s0003g03750.t01	Wine grape	plastid	64.49	62.15
CDY33218	Canola	plastid	63.46	61.87
CDX97576	Canola	plastid	63.12	61.64
CDX98455	Canola	plastid	62.95	61.47
KRH58642	Soybean	plastid	61.58	61.05
KRH42549	Soybean	plastid	61.23	60.61
CDX88443	Canola	plastid	62.09	60.13
Zm00001d031086_P001	Maize	plastid	58.66	60.11
CDY52448	Canola	plastid	61.75	59.8
GSMUA_Achr4P22870_001	Banana	plastid	61.41	59.57
GSMUA_Achr6P31180_001	Banana	plastid	60.89	58.87
TraesCS5D01G383500.1	Wheat	plastid	59.69	58.49
TraesCS5A01G374000.1	Wheat	plastid	59.18	58.38
GSMUA_Achr4P31460_001	Banana	plastid	60.38	58.37
Os03t0645900-00	Rice	plastid	60.72	58.22
GSMUA_Achr7P01250_001	Banana	plastid	60.21	58.21
TraesCS5B01G375900.1	Wheat	plastid	59.35	58.15
Zm00001d033222_P001	Maize	extracellular	60.21	58.11
GSMUA_Achr5P02570_001	Banana	plastid	60.55	57.87
GSMUA_Achr2P12950_001	Banana	plastid	58.32	57.73
HORVU5Hr1G008050.1	Barley	plastid	60.03	57.66
EER93751	Sorghum	plastid	60.38	57.61
Zm00001d013689_P001	Maize	plastid	59.01	57.24
OQU88453	Sorghum	plastid	55.92	56.89
TraesCS5B01G029300.1	Wheat	plastid	59.86	56.84
Zm00001d000095_P001	Maize	cytosol	15.95	56.71
Zm00001d018819_P001	Maize	plastid	55.57	56.54
TraesCS5D01G038800.1	Wheat	plastid	59.52	56.42
Zm00001d041319_P001	Maize	plastid	58.32	56.29
Zm00001d007876_P001	Maize	plastid	55.4	56.17
HORVU5Hr1G054970.1	Barley	cytosol	58.49	56.09
Os07t0154100-01	Rice	plastid	55.4	55.5
CDX98457	Canola	plastid	29.67	54.92
TraesCS2D01G251600.1	Wheat	plastid	54.72	54.81
TraesCS2B01G268400.1	Wheat	plastid	55.23	54.03
HORVU5Hr1G092850.2	Barley	plastid	59.35	53.73
HORVU5Hr1G044510.1	Barley	cytosol	55.06	53.5
TraesCS2A01G250600.1	Wheat	plastid	53.52	52.61
CDX85148	Canola	cytosol	52.32	52.14
CDX77467	Canola	plastid	52.14	51.97
Zm00001d000157_P001	Maize	cytosol	9.09	50.48
Zm00001d023458_P001	Maize	cytosol	11.66	48.23
Zm00001d042076_P001	Maize	cytosol, plastid	31.56	43.81
Zm00001d022623_P001	Maize	cytosol	25.21	39.41
Zm00001d035724_P001	Maize	plastid	39.45	36.22
CDY53711	Canola	cytosol	31.05	34.48
CDX76489	Canola	plastid	31.05	34.02
CDX93902	Canola	cytosol	30.53	33.9
Zm00001d019813_P001	Maize	plastid	10.81	33.33
CDY34748	Canola	endoplasmic reticulum, extracellular	27.44	33.13
CDX99397	Canola	plastid	33.1	32.55
CDX78923	Canola	plastid	33.1	32.38
CDY34746	Canola	cytosol	6.69	30.47
CDY34747	Canola	cytosol	7.03	30.37
CDX76782	Canola	mitochondrion	30.36	28.92
CDX76783	Canola	plastid	29.33	27.99
Zm00001d009286_P001	Maize	plastid	11.84	27.38
Zm00001d027592_P001	Maize	mitochondrion	18.18	24.88
Zm00001d033377_P001	Maize	plastid	12.01	24.65

Protein Annotations

EnsemblPlants:CDY01534	EnsemblPlantsGene:GSBRNA2T00112563001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF42	PFAM:PF03055	ProteinID:CDY01534	ProteinID:CDY01534.1	SEG:seg	UniParc:UPI0004EDDB51
MapMan:11.1.1.4	:	:	:	:	:

Description

BnaC07g35240D

Coordinates

chrLK031927:+:453874..455625

Molecular Weight (calculated)

64825.6 Da

IEP (calculated)

5.636

GRAVY (calculated)

-0.243

Length

583 amino acids

Sequence
(BLAST)

001: MMVSLLTMSM SGAQTWPQAH TDLGFGPIKR QPKIKCTVHI DVTELPLKRP SFTPRTTATP PRHNPLRLNI FQKAAAIAID AAERALISRE QDTPLPKTAD
101: PRIQIAGNYF PVPEFPVREC LDVEGTIPDC IDGVYVRNGA NPMFEPIAGH HLFDGDGMVH AVKITNGSAS YACRFTKTER LIQEKRLGRP VFPKAIGELH
201: GHSGIARLML FYARGLCGLV NNQNGVGVAN AGLVYFNNRL LAMSEDDLPY QLKITQTGDL QTVGRYDFDG QLKSSMIAHP KLDPVTKELH ALSYDVVKKP
301: YLKYFRFSPE GVKSPELEIP LETPTMIHDF AITENFVVIP DQQVVFKLGE MIAGNSPVIF DGEKVSRLGI MPKDATEASE VIWVNSPETF CFHLWNAWES
401: PDTEEVVVIG SCMSPADSIF NERDESLRSV LTEIRINLRT REATRRALLD DDVNLEIGMV NRNRLGRKTR FAFLAIADPW PKVSGFAKVD LCTGEIEKYI
501: YGGDKYGGEP FFLPGGTVDG KGGENEDDGY IFSHVHDEEK ETSELQIINA VNLKLEATIK LPSRVPYGFH GTFVDSSELV DQS

Best Arabidopsis Sequence Match ( AT4G18350.1 )
(BLAST)

001: MVSLLTMPMS GGIKTWPQAQ IDLGFRPIKR QPKVIKCTVQ IDVTELTKKR QLFTPRTTAT PPQHNPLRLN IFQKAAAIAI DAAERALISH EQDSPLPKTA
101: DPRVQIAGNY SPVPESSVRR NLTVEGTIPD CIDGVYIRNG ANPMFEPTAG HHLFDGDGMV HAVKITNGSA SYACRFTKTE RLVQEKRLGR PVFPKAIGEL
201: HGHSGIARLM LFYARGLCGL INNQNGVGVA NAGLVYFNNR LLAMSEDDLP YQLKITQTGD LQTVGRYDFD GQLKSAMIAH PKLDPVTKEL HALSYDVVKK
301: PYLKYFRFSP DGVKSPELEI PLETPTMIHD FAITENFVVI PDQQVVFKLG EMISGKSPVV FDGEKVSRLG IMPKDATEAS QIIWVNSPET FCFHLWNAWE
401: SPETEEIVVI GSCMSPADSI FNERDESLRS VLSEIRINLR TRKTTRRSLL VNEDVNLEIG MVNRNRLGRK TRFAFLAIAY PWPKVSGFAK VDLCTGEMKK
501: YIYGGEKYGG EPFFLPGNSG NGEENEDDGY IFCHVHDEET KTSELQIINA VNLKLEATIK LPSRVPYGFH GTFVDSNELV DQL

Arabidopsis Description

NCED29-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49505]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.