CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93902	Canola	cytosol	97.52	97.52
Bra040449.1-P	Field mustard	cytosol	94.67	90.86
CDY34746	Canola	cytosol	20.76	85.16
CDY34748	Canola	endoplasmic reticulum, extracellular	75.24	81.78
VIT_13s0064g00810.t01	Wine grape	cytosol	77.71	80.0
VIT_13s0064g00840.t01	Wine grape	extracellular	81.71	78.57
Solyc01g087250.2.1	Tomato	cytosol, plastid	80.0	77.06
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	80.0	76.78
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	77.71	75.56
TraesCS5D01G001900.1	Wheat	cytosol, golgi	78.67	75.23
Zm00001d034075_P001	Maize	cytosol	5.14	75.0
Os12t0640600-01	Rice	plasma membrane	77.14	75.0
TraesCS5A01G001500.2	Wheat	cytosol	78.29	75.0
OQU93261	Sorghum	cytosol	77.52	74.82
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	77.9	74.64
Zm00001d048373_P002	Maize	cytosol, plasma membrane	77.14	73.64
Solyc01g087260.2.1	Tomato	plastid	75.81	73.03
CDX76782	Canola	mitochondrion	84.95	72.88
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	79.43	72.65
HORVU5Hr1G000320.9	Barley	plastid	78.29	72.49
CDX76783	Canola	plastid	83.62	71.85
TraesCS5B01G001800.1	Wheat	cytosol	72.76	70.74
TraesCS5D01G002800.1	Wheat	cytosol	74.1	70.6
HORVU4Hr1G006300.1	Barley	cytosol	73.52	69.55
TraesCS5A01G002400.1	Wheat	cytosol	73.71	68.74
TraesCS5A01G002200.1	Wheat	cytosol	68.19	67.67
CDY34747	Canola	cytosol	15.81	61.48
TraesCS5D01G002900.1	Wheat	plastid	71.43	61.07
CDX82482	Canola	cytosol	30.29	40.15
CDY57471	Canola	cytosol	29.71	39.39
CDX98456	Canola	cytosol	18.48	38.04
CDY39117	Canola	mitochondrion	37.14	35.26
CDY52448	Canola	plastid	38.48	33.55
CDX99397	Canola	plastid	37.71	33.39
CDX78923	Canola	plastid	37.71	33.22
CDX85148	Canola	cytosol	36.95	33.16
CDY33218	Canola	plastid	37.71	33.11
CDX88443	Canola	plastid	37.9	33.06
CDX77467	Canola	plastid	36.76	32.99
CDY61838	Canola	plastid	36.95	32.94
CDY26294	Canola	plastid	36.95	32.94
CDX76489	Canola	plastid	32.95	32.52
CDX97576	Canola	plastid	36.76	32.33
CDX98455	Canola	plastid	36.38	31.99
CDY55629	Canola	cytosol, plastid	35.05	31.56
CDY01534	Canola	cytosol, plastid	34.48	31.05
CDX78842	Canola	plastid	33.9	30.64
CDX99475	Canola	plastid	33.52	30.29
CDX98457	Canola	plastid	16.76	27.94

Protein Annotations

EnsemblPlants:CDY53711	EnsemblPlantsGene:GSBRNA2T00011270001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF37	PFAM:PF03055	ProteinID:CDY53711	ProteinID:CDY53711.1	SEG:seg	UniParc:UPI0004EEDF43
UniProt:A0A078IV01	MapMan:9.1.6.3.1	:	:	:	:

Description

BnaAnng12520DBnaAnng12520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV01]

Coordinates

chrLK033230:-:13636..16828

Molecular Weight (calculated)

59318.6 Da

IEP (calculated)

5.963

GRAVY (calculated)

-0.256

Length

525 amino acids

Sequence
(BLAST)

001: MAENCIVSVN PKPSKGLSSK LLDLVERVVV KLMHDASLPL HYLSGNFAPV RDETPPVKDL PVVHGFLPEC LNGEFVRVGP NPKFDGDGMI HAVRIKDGKA
101: TYVSRYVKTS RLKQEEFFGA PKFMKIGDLK GLLGLLMVYL QQLRTKLKVL DVSYGHGTAN TALVYHHGKL LALSEADKPY VVKVLEDGDL QTLGMMDYDK
201: RLTHSFTAHP KVDPTTGEMF TFGYSQTPPY LTYRVISEDG FMHDPVPITI SEPIMMHDFA ITETYAIFMD LPMHFRPKEM VKEKKMVYSF DPTKKARFGV
301: LPRYAKDELM IRWFELPNCF IFHNANAWEE EDEVVLITCR LENPDLDMVG GDAKEKLENF SNELYEMRFN MKTGSASQKK LSPSAVDFPR INECYTGKKQ
401: RYVYGTILDS IAKVTGIIKF DLHAEAETGK EILEVGGNIK GIYELGQGRY GSEAIYVPRE AGEEDDGYLI FFVHDENTGK SCVNVIDAKT MSAEPVAVVE
501: LPHRVPYGFH AFFVTEEQLQ EQTLT

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.