CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

cytosol 3
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	93.89	88.33
VIT_13s0064g00810.t01	Wine grape	cytosol	76.3	80.78
VIT_13s0064g00840.t01	Wine grape	extracellular	80.19	79.3
CDY34746	Canola	cytosol	18.52	78.12
Zm00001d034075_P001	Maize	cytosol	5.19	77.78
CDY53711	Canola	cytosol	75.56	77.71
CDX93902	Canola	cytosol	75.19	77.33
AT3G63520.1	Thale cress	cytosol	76.11	76.39
Solyc01g087250.2.1	Tomato	cytosol, plastid	76.85	76.15
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	75.74	74.77
CDY34748	Canola	endoplasmic reticulum, extracellular	65.37	73.08
TraesCS5D01G001900.1	Wheat	cytosol, golgi	74.07	72.86
TraesCS5A01G001500.2	Wheat	cytosol	73.15	72.08
OQU93261	Sorghum	cytosol	72.59	72.06
Solyc01g087260.2.1	Tomato	plastid	72.59	71.93
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	72.78	71.72
Zm00001d048373_P002	Maize	cytosol, plasma membrane	72.59	71.27
Os12t0640600-01	Rice	plasma membrane	70.74	70.74
HORVU5Hr1G000320.9	Barley	plastid	73.33	69.84
Bra040449.1-P	Field mustard	cytosol	70.74	69.84
TraesCS5B01G001800.1	Wheat	cytosol	67.78	67.78
TraesCS5D01G002800.1	Wheat	cytosol	68.89	67.51
HORVU4Hr1G006300.1	Barley	cytosol	68.15	66.31
TraesCS5A01G002400.1	Wheat	cytosol	68.7	65.9
TraesCS5A01G002200.1	Wheat	cytosol	63.89	65.22
Bra007826.1-P	Field mustard	plastid	70.37	63.44
CDX76783	Canola	plastid	71.48	63.18
CDX76782	Canola	mitochondrion	71.3	62.91
Bra007825.1-P	Field mustard	plastid	64.26	60.35
TraesCS5D01G002900.1	Wheat	plastid	67.04	58.96
CDY34747	Canola	cytosol	14.63	58.52
KRH76475	Soybean	plastid	34.07	31.19
KRH42549	Soybean	plastid	33.89	31.07
KRH58642	Soybean	plastid	33.33	30.61
KRH43866	Soybean	plastid	24.81	29.19
KRH52732	Soybean	plastid	28.52	26.51
KRH62062	Soybean	cytosol, plastid	27.59	25.73
KRH52736	Soybean	mitochondrion, plastid	27.96	25.72
KRH62063	Soybean	cytosol	20.93	23.4
KRH13600	Soybean	plastid	23.33	21.91
KRH45171	Soybean	plastid	6.67	21.82

Protein Annotations

EMBL:ACUP02007805	EnsemblPlants:KRH27468	EnsemblPlantsGene:GLYMA_12G236700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055	ProteinID:KRH27468	ProteinID:KRH27468.1	SEG:seg
UniParc:UPI0002948E3B	UniProt:I1LVC9	MapMan:9.1.6.3.1	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:39548200..39554348

Molecular Weight (calculated)

60817.0 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.305

Length

540 amino acids

Sequence
(BLAST)

001: MGDDGKKMSG EGGIVKVEPK PSNGFTSKVV DLLEKLVVKF LYDSSLTHHY LTGNFAPVPE TPPTKDLPVK GYLPDCLNGE FVRVGPNPKF SPVAGYHCSG
101: ICFSNFDLLN CRMIHGLRIK DGKATYVSRF VRTSRLKQEE YFGGSKFMKI GDLKGLFGLL MVNIHMLRTK WKVLDVSYGT GTANTALVYH HGKLLALSEA
201: DKPYAIKVFE DGDLQTLGML DYDKRLGHSF TAHPKVDPFT DVYTYRVISK DGYMHDPVPI TVSDPIMMHD FAITENYAIF LDLPLIFRPK EMVKNKTLIF
301: SFDSTKKARF GVLPRYAKDE KLIRWFELPN CFIFHNANAW EEEDEVVLIT CRLQNPNLDL VGGTAKEKLE NFSNELYEMR FNMKTGEASQ KKLSASAVDF
401: PRVNESYTGR KQRYVYGTTL DSIAKVTGII KFDLHAEPDH GKTKLEVGGN VQGLYDLGPG KYGSEAVYVP RVPGTDSEED DGYLIFFAHD ENTRKSFVHV
501: INAKTMSADP VAVVELPHRV PYGFHAFFVT EEQLQEQGKL

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.