CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98456	Canola	cytosol	35.13	79.22
Bra001552.1-P	Field mustard	cytosol	42.78	62.12
CDX82482	Canola	cytosol	42.78	62.12
CDY57471	Canola	cytosol	42.26	61.36
KRH43866	Soybean	plastid	46.78	58.61
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	48.52	55.14
VIT_19s0093g00550.t01	Wine grape	plastid	54.26	51.23
CDY39117	Canola	mitochondrion	48.52	50.45
Solyc07g056570.1.1	Tomato	plastid	52.52	49.92
AT3G14440.1	Thale cress	plastid	50.43	48.41
CDY33218	Canola	plastid	50.26	48.33
Bra021558.1-P	Field mustard	plastid	50.09	48.16
CDX98455	Canola	plastid	49.74	47.91
CDX97576	Canola	plastid	49.74	47.91
Bra027336.1-P	Field mustard	plastid	49.39	47.57
KRH58642	Soybean	plastid	44.35	43.37
KRH42549	Soybean	plastid	42.43	41.43
KRH76475	Soybean	plastid	25.22	24.58
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	21.91	23.33
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	22.43	22.47
CDX98457	Canola	plastid	11.48	20.95
KRH45171	Soybean	plastid	5.74	20.0
KRH52736	Soybean	mitochondrion, plastid	18.26	17.89
KRH62063	Soybean	cytosol	14.26	16.98
KRH62062	Soybean	cytosol, plastid	16.87	16.75
KRH52732	Soybean	plastid	16.7	16.52

Protein Annotations

EMBL:ACUP02009761	EMBL:ACUP02009762	EnsemblPlants:KRH13600	EnsemblPlantsGene:GLYMA_15G250100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114
InterPro:Carotenoid_Oase	ncoils:Coil	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	ProteinID:KRH13600
ProteinID:KRH13600.1	SEG:seg	UniParc:UPI0006ED8E12	UniProt:A0A0R0G5P0	MapMan:11.1.1.4	:

Description

hypothetical protein

Coordinates

chr15:+:47770068..47772782

Molecular Weight (calculated)

49195.3 Da

IEP (calculated)

7.872

GRAVY (calculated)

-0.385

Length

575 amino acids

Sequence
(BLAST)

001: MASSAAATTT TNTWIKTTLP SPPTTLKKRF PCNSNSNSNS NAITCSLQTL HFPKKYQPTS TTTTTTTTTT PARETKPVIA SPSETKHPLP QSWNFSRKQR
101: LSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXSE DDLPYHLRLT PNGDLTTVGR YNFNGQLKST MIAHPKVDPV TNDLHALSYD VVQKPYLKYF
301: RFSPNGVKSP DVEIPLKEPT MMHDFAITEN FVVIPDQQVV FKLSEMISGG SPVVYDKNKV SRFGILNKNA KDPNGMKWID APECFCFHLW NAWEEPENDE
401: IVVIGSCMTP ADSIFNECDE SLKSVLSEIR LNLKTGKSTR KPIISESQQV NLEAGMVNRN KLGRKTQFAY LALAEPWPKV SGFAKVDLFS GEVNKYMYGE
501: ERFGGEPLFL PNGVDGDEDD GYILAFVHDE KEWKSELQIV NAKTLKLEAS VKLPSRVPYG FHGTFIHSND LRKQA

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.