Factsheet for VIT_19s0093g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	66.83	80.43
CDX82482	Canola	cytosol	51.89	79.8
CDX98456	Canola	cytosol	33.33	79.61
Bra001552.1-P	Field mustard	cytosol	51.72	79.55
CDY57471	Canola	cytosol	51.72	79.55
CDY39117	Canola	mitochondrion	68.47	75.41
VIT_10s0003g03750.t01	Wine grape	plastid	74.55	75.04
Solyc07g056570.1.1	Tomato	plastid	72.25	72.73
CDX98455	Canola	plastid	70.94	72.36
CDY33218	Canola	plastid	70.44	71.74
Bra021558.1-P	Field mustard	plastid	70.44	71.74
CDX97576	Canola	plastid	70.28	71.69
Bra027336.1-P	Field mustard	plastid	70.28	71.69
AT3G14440.1	Thale cress	plastid	70.44	71.62
Zm00001d027690_P001	Maize	cytosol	8.87	70.13
Zm00001d008638_P001	Maize	cytosol	9.36	69.51
KRH43866	Soybean	plastid	51.4	68.19
Zm00001d023690_P001	Maize	cytosol	14.61	67.94
GSMUA_Achr4P22870_001	Banana	plastid	67.0	67.89
Os12t0617400-01	Rice	cytosol	31.2	67.14
GSMUA_Achr5P02570_001	Banana	plastid	67.16	67.05
GSMUA_Achr2P12950_001	Banana	plastid	64.7	66.89
GSMUA_Achr6P31180_001	Banana	plastid	65.68	66.33
CDX98457	Canola	plastid	33.66	65.08
GSMUA_Achr4P31460_001	Banana	plastid	64.2	64.84
GSMUA_Achr7P01250_001	Banana	plastid	64.2	64.84
Zm00001d031086_P001	Maize	plastid	60.43	64.67
OQU88453	Sorghum	plastid	59.93	63.7
TraesCS5D01G383500.1	Wheat	plastid	62.07	63.53
TraesCS5B01G375900.1	Wheat	plastid	62.07	63.53
TraesCS5A01G374000.1	Wheat	plastid	61.58	63.45
Zm00001d018819_P001	Maize	plastid	59.61	63.35
Os03t0645900-00	Rice	plastid	62.73	62.83
Zm00001d033222_P001	Maize	extracellular	62.23	62.75
Zm00001d007876_P001	Maize	plastid	59.11	62.61
EER93751	Sorghum	plastid	62.56	62.36
Zm00001d013689_P001	Maize	plastid	61.41	62.23
Zm00001d041319_P001	Maize	plastid	61.58	62.09
TraesCS2D01G251600.1	Wheat	plastid	59.28	62.03
HORVU5Hr1G008050.1	Barley	plastid	61.41	61.61
Os07t0154100-01	Rice	plastid	58.78	61.51
TraesCS5B01G029300.1	Wheat	plastid	61.74	61.24
Zm00001d000095_P001	Maize	cytosol	16.42	60.98
TraesCS5D01G038800.1	Wheat	plastid	61.41	60.81
TraesCS2B01G268400.1	Wheat	plastid	59.44	60.74
HORVU5Hr1G054970.1	Barley	cytosol	60.59	60.69
TraesCS2A01G250600.1	Wheat	plastid	57.8	59.36
HORVU5Hr1G092850.2	Barley	plastid	62.07	58.7
HORVU5Hr1G044510.1	Barley	cytosol	57.47	58.33
Zm00001d000157_P001	Maize	cytosol	9.69	56.19
VIT_05s0051g00670.t01	Wine grape	plastid	52.38	55.48
KRH13600	Soybean	plastid	51.23	54.26
Zm00001d023458_P001	Maize	cytosol	11.99	51.77
Zm00001d042076_P001	Maize	cytosol, plastid	33.17	48.1
Zm00001d022623_P001	Maize	cytosol	26.77	43.7
Zm00001d035724_P001	Maize	plastid	39.74	38.11
VIT_13s0064g00810.t01	Wine grape	cytosol	31.2	37.25
VIT_13s0064g00840.t01	Wine grape	extracellular	32.35	36.08
VIT_02s0087g00930.t01	Wine grape	plastid	33.99	35.14
Zm00001d019813_P001	Maize	plastid	10.84	34.92
VIT_02s0087g00910.t01	Wine grape	plastid	33.5	34.06
VIT_16s0039g01370.t01	Wine grape	plastid	30.21	32.97
Zm00001d009286_P001	Maize	plastid	11.82	28.57
Zm00001d027592_P001	Maize	mitochondrion	19.21	27.46
Zm00001d033377_P001	Maize	plastid	12.15	26.06
VIT_04s0008g03510.t01	Wine grape	cytosol	23.15	24.87
VIT_04s0008g03480.t01	Wine grape	cytosol	23.97	21.01
VIT_11s0016g02740.t01	Wine grape	cytosol	6.24	20.32
VIT_04s0008g03450.t01	Wine grape	plastid	13.46	18.98

Protein Annotations

EntrezGene:100232942	wikigene:100232942	EntrezGene:100267016	wikigene:100267016	MapMan:11.1.1.4	ProteinID:AAR11193
ProteinID:AAR11193.1	ProteinID:AFP28804	ProteinID:AFP28804.1	EMBL:AM468138	EMBL:AY337613	ProteinID:CAN81383
ProteinID:CAN81383.1	ProteinID:CCB57198	ProteinID:CCB57198.1	InterPro:Carotenoid_Oase	UniProt:F6HR90	EMBL:FN596009
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EMBL:JQ319644	EntrezGene:LOC100267016	wikigene:LOC100267016
EntrezGene:NCED1	wikigene:NCED1	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	TIGR:TC57089
UniParc:UPI00015CCD9B	ArrayExpress:VIT_19s0093g00550	EnsemblPlantsGene:VIT_19s0093g00550	EnsemblPlants:VIT_19s0093g00550.t01	unigene:Vvi.24382	unigene:Vvi.509
RefSeq:XP_002277354	RefSeq:XP_002277354.1	RefSeq:XP_019072404.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:17645348..17647649

Molecular Weight (calculated)

67135.7 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.317

Length

609 amino acids

Sequence
(BLAST)

001: MASPAAAAAS TPNISACVKP KLCYSSSSSS SSSSARDLGS FSFHRPTIRP NINCSLHSPS VLHFPKHTSS STGVATVKTT LPKEKDGFSS SVSPQWNFLQ
101: SAAAMALDAV ETALVARETQ HPLPKTADPR VQIAGNFAPV PEQPVHHSLP VDGRIPDCIQ GVYTRNGANP LHKPVAGHHL FDGDGMVHAV QFKDGDASYA
201: CRFTETQRLI QERDFGRPVF PKAIGELHGH SGIARLLLFY ARGLFGLVDH SHGTGVANAG LVYFNRRLLA MSEDDLPYQI RVTPSGDLET VGRYDFEGQL
301: RSTMIAHPKV DPVSGEMFAL SYDVVQKPYL KYFRFSPKGD KSPDVEIPLA EPTMMHDFAI TERFVVVPDQ QVVFKLQEMI SGGSPVVYEK NKMSRFGVLD
401: KNATDASGMR WIEAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE CDEGLKSVLS EIRLNLKTGK STRRPILPES EQVNLEAGMV NRNRLGRKTQ
501: FAYLAVAEPW PKVSGFAKVD LSTGQVSKYI YGEQRYGGEP LFLPRDPNSG REDDGYILAF VHDEKTWKSE LQIVNATNLQ LEASVKLPSR VPYGFHGTFI
601: SSKELEKQA

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.