Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g02740.t01 | Wine grape | cytosol | 25.47 | 94.65 |
| VIT_04s0008g03510.t01 | Wine grape | cytosol | 62.16 | 76.19 |
| KRH52736 | Soybean | mitochondrion, plastid | 52.52 | 62.18 |
| Solyc08g066720.1.1 | Tomato | cytosol | 36.12 | 60.63 |
| KRH62063 | Soybean | cytosol | 41.44 | 59.63 |
| KRH52732 | Soybean | plastid | 48.63 | 58.18 |
| KRH62062 | Soybean | cytosol, plastid | 48.06 | 57.69 |
| PGSC0003DMT400011006 | Potato | cytosol | 46.19 | 52.88 |
| PGSC0003DMT400011015 | Potato | plastid | 45.04 | 51.06 |
| Os06t0162550-00 | Rice | mitochondrion, plastid | 40.58 | 49.3 |
| VIT_04s0008g03450.t01 | Wine grape | plastid | 29.64 | 47.69 |
| KXG19379 | Sorghum | mitochondrion, plastid | 39.86 | 46.55 |
| Zm00001d045232_P001 | Maize | plastid | 39.14 | 44.37 |
| VIT_13s0064g00810.t01 | Wine grape | cytosol | 22.01 | 30.0 |
| VIT_13s0064g00840.t01 | Wine grape | extracellular | 22.16 | 28.21 |
| VIT_16s0039g01370.t01 | Wine grape | plastid | 20.0 | 24.91 |
| VIT_05s0051g00670.t01 | Wine grape | plastid | 20.29 | 24.52 |
| VIT_19s0093g00550.t01 | Wine grape | plastid | 21.01 | 23.97 |
| VIT_02s0087g00910.t01 | Wine grape | plastid | 20.58 | 23.87 |
| VIT_02s0087g00930.t01 | Wine grape | plastid | 20.14 | 23.77 |
| VIT_10s0003g03750.t01 | Wine grape | plastid | 20.58 | 23.64 |
Protein Annotations
| EntrezGene:100242297 | wikigene:100242297 | MapMan:35.1 | ProteinID:CCB46706 | ProteinID:CCB46706.1 | InterPro:Carotenoid_Oase |
| UniProt:F6H3E2 | EMBL:FN595231 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 |
| EntrezGene:LOC100242297 | wikigene:LOC100242297 | PFAM:PF03055 | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF30 | UniParc:UPI000210A963 |
| ArrayExpress:VIT_04s0008g03480 | EnsemblPlantsGene:VIT_04s0008g03480 | EnsemblPlants:VIT_04s0008g03480.t01 | RefSeq:XP_002281310 | RefSeq:XP_002281310.2 | : |
Description
No Description!
Coordinates
chr4:+:2872869..2878007
Molecular Weight (calculated)
78495.0 Da
IEP (calculated)
7.331
GRAVY (calculated)
-0.315
Length
695 amino acids
Sequence
(BLAST)
(BLAST)
001: MHERLCNEKY EQKNPQCPHL GELLSSKNKS ENPLGPWTAK NGFVLKLFEV RLLQGSSGVI QLVLLTSRIY MRDQYALISW QKPKGLNLSN RRRRLDPEMA
101: SFSFALQVNG LFHNHSISHS FDHLKTFLSS AVKKISVRTD IAKTLKNTSN RMLDAFVDST FQFVSQPLLP SQKNFAPVEE IGEAVQVVCI EGIIPVDFRA
201: GVYIRNGSNP LFGGLKYTIS IFGRSSHIWV EGEGMLHAIY FMKDAHGDWI ISYKNRYVES ETFKLEKQRN KPSFLPTVEG DSPAIIAAYL LNMLRFGMVN
301: KQISSTSIFE HSRKFYAITE NHLPQEIDIF TLETLEEWDV NGAWDRPFTS HPKKAPGTGE LVTIGMDGQK PFIVAGVISA DGNMLSHKVD LKFNRATLIH
401: EIGVTQKYNV IMDCPLTVDM NRLVAGGPLI KYDKEGYTRI GVMPRYGNAD SVKWFDVEAN CTLHILNSFE DGNEVVVRGC RALESIIPGP DQGLNKFEWF
501: SMGFKPIEIS NKNSNGFTQE GFLFARVYEW RLNMETGEVK ERNLTGTDVS MEFPMINEDF TGVKHKYGYT QVLDSMASSS CGMAKYGGLA KLYFEEQDKT
601: LPARDGKKGQ LIKVEYHRFE ENNFCSGSAF VPKQGGVEED DGWIISFVHN EDTNISQVHI IDARKFDSKP VAKITLPQRV PYGFHGTFIP MPGQA
101: SFSFALQVNG LFHNHSISHS FDHLKTFLSS AVKKISVRTD IAKTLKNTSN RMLDAFVDST FQFVSQPLLP SQKNFAPVEE IGEAVQVVCI EGIIPVDFRA
201: GVYIRNGSNP LFGGLKYTIS IFGRSSHIWV EGEGMLHAIY FMKDAHGDWI ISYKNRYVES ETFKLEKQRN KPSFLPTVEG DSPAIIAAYL LNMLRFGMVN
301: KQISSTSIFE HSRKFYAITE NHLPQEIDIF TLETLEEWDV NGAWDRPFTS HPKKAPGTGE LVTIGMDGQK PFIVAGVISA DGNMLSHKVD LKFNRATLIH
401: EIGVTQKYNV IMDCPLTVDM NRLVAGGPLI KYDKEGYTRI GVMPRYGNAD SVKWFDVEAN CTLHILNSFE DGNEVVVRGC RALESIIPGP DQGLNKFEWF
501: SMGFKPIEIS NKNSNGFTQE GFLFARVYEW RLNMETGEVK ERNLTGTDVS MEFPMINEDF TGVKHKYGYT QVLDSMASSS CGMAKYGGLA KLYFEEQDKT
601: LPARDGKKGQ LIKVEYHRFE ENNFCSGSAF VPKQGGVEED DGWIISFVHN EDTNISQVHI IDARKFDSKP VAKITLPQRV PYGFHGTFIP MPGQA
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.