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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 3
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG19379 Sorghum mitochondrion, plastid 74.3 71.43
Zm00001d045232_P001 Maize plastid 71.68 66.88
VIT_11s0016g02740.t01 Wine grape cytosol 15.73 48.13
Solyc08g066720.1.1 Tomato cytosol 34.44 47.58
VIT_04s0008g03510.t01 Wine grape cytosol 46.5 46.91
KRH52736 Soybean mitochondrion, plastid 43.53 42.42
KRH52732 Soybean plastid 42.31 41.65
KRH62062 Soybean cytosol, plastid 41.26 40.76
VIT_04s0008g03480.t01 Wine grape cytosol 49.3 40.58
PGSC0003DMT400011006 Potato cytosol 43.01 40.53
Os09t0321200-00 Rice plastid 40.21 40.35
PGSC0003DMT400011015 Potato plastid 42.31 39.48
KRH62063 Soybean cytosol 33.22 39.34
Os08t0371608-00 Rice cytosol 37.24 39.23
Os08t0369800-01 Rice plastid 23.25 34.82
VIT_04s0008g03450.t01 Wine grape plastid 23.6 31.25
Os12t0640600-01 Rice plasma membrane 25.17 26.67
Os04t0131800-00 Rice extracellular 7.87 26.01
Os12t0617400-01 Rice cytosol 12.59 25.44
Os12t0435200-01 Rice plastid 25.17 25.0
Os07t0154100-01 Rice plastid 23.6 23.2
Os02t0704000-01 Rice plastid 25.35 22.73
Os03t0645900-00 Rice plastid 22.55 21.22
Protein Annotations
EnsemblPlants:Os06t0162550-00EnsemblPlantsGene:Os06g0162550GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0005488
GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0016702GO:GO:0016740GO:GO:0032259
GO:GO:0046872GO:GO:0055114InterPro:Carotenoid_OasePANTHER:PTHR10543PANTHER:PTHR10543:SF82PFAM:PF03055
ProteinID:BAS96300.1UniParc:UPI00039397F5UniProt:A0A0P0WT80MapMan:35.1::
Description
Carotenoid oxygenase domain containing protein. (Os06t0162550-00)
Coordinates
chr6:-:3148015..3153030
Molecular Weight (calculated)
64099.4 Da
IEP (calculated)
5.495
GRAVY (calculated)
-0.410
Length
572 amino acids
Sequence
(BLAST)
001: MFRAGGCSSQ VTRCIHLGKS PADQASSLSP PNAVKVQSSV TGWNKQPLMQ ELTKALKSVS SDLLDRFIDS VYKFSEQPYL NEGNFGPVNE IGDEVFIDDL
101: NGEVPKDFPE GVYIRNGPNP LNASQTAAES IFGPTSYMYY EGHGMLHAIY LSKSNLGEWR ISYKNKYVDT DTFELERKKN KIAFLPSAEG EPCATLVAFL
201: LNTVRFGKPV KDSANTSIFQ HAGRAFAATE NHLPYEIDIN NLRTLGPYNI NGAWDQPFTS HPKKICGSGE LVTMGTNIEK PHYVLGVISS DGERLLHKVD
301: LKFEEGKLIH DIGVTAQFIQ NDMGGISRIG VMPRFGDADS IIWFDVENHC SYHLFNCFED GNEVVIRGCR TLDSVLSSAS HDDDKSKCSG RAFLQPDKNS
401: EGFDPSVDGT LFSRPYEWRL NLKSGTTKEG YLTDEKVAMD FPVINEDFVG VKNNYGYAQV VDSVATSEIG LFKYNRIAKV HFDRQDKENK QLKSVEYHVL
501: KEKTFCSGVQ FVAKENGIDE DDGWIITYVH DELTNVSQVY IIDAKRFAEE PVLKITLPQR VPYGFHGNFF YK
Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)
001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
Arabidopsis Description
CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.