Factsheet for Os02t0704000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0815700-01
Os05t0533500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	Os01t0815700-01	AT5G17790.1	15340011
AT4G19170.1	Os05t0533500-01	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051556_P001	Maize	plastid	78.68	78.68
KXG30924	Sorghum	plastid	78.37	78.49
HORVU6Hr1G068720.1	Barley	plastid	78.84	78.23
TraesCS6D01G251800.1	Wheat	plastid	78.06	77.93
TraesCS6A01G271600.1	Wheat	plastid	78.06	77.93
TraesCS6B01G298800.1	Wheat	plastid	78.06	77.45
Zm00001d017766_P001	Maize	plastid	77.12	77.0
Bra013378.1-P	Field mustard	peroxisome	52.82	66.87
Os12t0435200-01	Rice	plastid	56.58	62.67
CDX78923	Canola	plastid	54.55	58.39
CDX99397	Canola	plastid	54.23	58.35
AT4G19170.1	Thale cress	plastid	54.23	58.15
KRH76475	Soybean	plastid	53.76	58.14
CDX76489	Canola	plastid	48.12	57.71
Bra020970.1-P	Field mustard	plastid	50.94	57.32
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	21.32	56.67
VIT_02s0087g00910.t01	Wine grape	plastid	53.13	56.59
VIT_02s0087g00930.t01	Wine grape	plastid	51.72	56.03
PGSC0003DMT400004981	Potato	plastid	51.88	56.01
Solyc08g075490.2.1	Tomato	plastid	51.1	54.88
Solyc08g075480.2.1	Tomato	plastid	49.06	54.25
PGSC0003DMT400047548	Potato	cytosol	31.97	53.68
GSMUA_Achr4P19020_001	Banana	plastid	42.16	51.14
PGSC0003DMT400047553	Potato	plastid	45.77	50.78
VIT_16s0039g01370.t01	Wine grape	plastid	43.42	49.64
PGSC0003DMT400004975	Potato	plastid	26.02	48.54
Os12t0617400-01	Rice	cytosol	18.5	41.7
Os07t0154100-01	Rice	plastid	35.42	38.83
Os03t0645900-00	Rice	plastid	34.8	36.51
Os04t0131800-00	Rice	extracellular	9.72	35.84
Os12t0640600-01	Rice	plasma membrane	29.94	35.37
Os06t0162550-00	Rice	mitochondrion, plastid	22.73	25.35
Os09t0321200-00	Rice	plastid	21.16	23.68
Os08t0369800-01	Rice	plastid	13.17	21.99
Os08t0371608-00	Rice	cytosol	18.5	21.73

Protein Annotations

EntrezGene:4330451	MapMan:9.1.6.3.2	EMBL:AB110203	EMBL:AK099580	EMBL:AY838897	ProteinID:BAD08075.1
ProteinID:BAF09772.1	ProteinID:BAS80498.1	InterPro:Carotenoid_Oase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009688	GO:GO:0009987
GO:GO:0016491	GO:GO:0016702	GO:GO:0045549	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
EnsemblPlantsGene:Os02g0704000	EnsemblPlants:Os02t0704000-01	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	UniProt:Q6YVJ0
UniParc:UPI00002368AB	RefSeq:XP_015626662.1	SEG:seg	:	:	:

Description

9-CIS-EPOXYCAROTENOID DIOXYGENASE 1Carotenoid oxygenase family protein. (Os02t0704000-01)

Coordinates

chr2:-:29026099..29028176

Molecular Weight (calculated)

68623.9 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.148

Length

638 amino acids

Sequence
(BLAST)

001: MQRICPAHCS VTHSLTMKSM RLSYIPPAAS AAPQSPSYGR KKNASAAPPS AAASTTVLTS PLVTTTRTPK QTEQEDEQLV AKTKTTRTVI ATTNGRAAPS
101: QSRPRRRPAP AAAASAASLP MTFCNALEEV INTFIDPPAL RPAVDPRNVL TSNFVPVDEL PPTPCPVVRG AIPRCLAGGA YIRNGPNPQH LPRGPHHLFD
201: GDGMLHSLLL PSPASSGDDP VLCSRYVQTY KYLVERDAGA PVLPNVFSGF HGVAGMARGA VVAARVLTGQ MNPLEGVGLA NTSLAYFAGR LYALGESDLP
301: YAVRVHPDTG EVTTHGRCDF GGRLVMGMTA HPKKDPVTGE LFAFRYGPVP PFVTYFRFDP AGNKGADVPI FSVQQPSFLH DFAITERYAI FPEIQIVMKP
401: MDMVVGGGSP VGSDPGKVPR LGVIPRYATD ESEMRWFEVP GFNIMHSVNA WEEAGGEELV LVAPNVLSIE HALEHMELVH SCVEKVRINL RTGVVTRTPL
501: AAGNFDFPVI NPAFLGRRNR YGYFGVGDPA PKIGGVAKLD FDRAGEGDCT VAQRDFGPGC FAGEPFFVAD DVEGNGNEDD GYLVCYVHDE ATGENRFVVM
601: DARSPDLEIV AEVQLPGRVP YGFHGLFVTQ AELQSQHQ

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.