Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047548 | Potato | cytosol | 64.52 | 97.63 |
| PGSC0003DMT400004978 | Potato | cytosol, mitochondrion, peroxisome | 27.13 | 65.0 |
| PGSC0003DMT400004981 | Potato | plastid | 63.48 | 61.76 |
| PGSC0003DMT400004975 | Potato | plastid | 33.74 | 56.73 |
| VIT_02s0087g00930.t01 | Wine grape | plastid | 57.91 | 56.54 |
| HORVU6Hr1G068720.1 | Barley | plastid | 52.87 | 47.28 |
| TraesCS6B01G298800.1 | Wheat | plastid | 52.87 | 47.28 |
| TraesCS6D01G251800.1 | Wheat | plastid | 52.52 | 47.26 |
| TraesCS6A01G271600.1 | Wheat | plastid | 52.52 | 47.26 |
| KXG30924 | Sorghum | plastid | 52.17 | 47.1 |
| Zm00001d051556_P001 | Maize | plastid | 52.0 | 46.87 |
| Os12t0435200-01 | Rice | plastid | 46.61 | 46.53 |
| Zm00001d017766_P001 | Maize | plastid | 51.48 | 46.32 |
| Os02t0704000-01 | Rice | plastid | 50.78 | 45.77 |
| GSMUA_Achr4P19020_001 | Banana | plastid | 34.09 | 37.26 |
| PGSC0003DMT400071048 | Potato | cytosol, mitochondrion | 32.7 | 37.15 |
| PGSC0003DMT400049305 | Potato | cytosol | 30.43 | 34.38 |
| PGSC0003DMT400039054 | Potato | plastid | 32.52 | 32.24 |
| PGSC0003DMT400011006 | Potato | cytosol | 24.0 | 22.73 |
| PGSC0003DMT400011015 | Potato | plastid | 23.48 | 22.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400047553 | EnsemblPlantsGene:PGSC0003DMG400018481 | EntrezGene:102589614 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 | InterPro:Carotenoid_Oase |
| PANTHER:PTHR10543 | PANTHER:PTHR10543:SF46 | PFAM:PF03055 | PGSC:PGSC0003DMG400018481 | RefSeq:XP_006361280.1 | SEG:seg |
| UniParc:UPI000295B9EB | UniProt:M1BKZ7 | MapMan:9.1.6.3.2 | : | : | : |
Description
Carotenoid cleavage dioxygenase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400018481]
Coordinates
chr8:-:3626959..3631890
Molecular Weight (calculated)
64706.1 Da
IEP (calculated)
7.004
GRAVY (calculated)
-0.100
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MNAFTFSFTY KLLLPYPKTL LFSPNRKSSY ASPQAIPKKS SSTQHNKLKP LKKSLLEPSF LEVFLNACDD FIDTYIDPPR HPFIDPECVL SDNFAPVDEL
101: PPTECEVVKG TLPPCLNGAY IRNGPNPQYF PRGPFHFFDG DGMLHSTKIS QGKAIFCSRY VKTYKYLVEK KAGYSVIPNV FSDFNSLIAL VIRGAMSITR
201: IIIGQFDPSN GFGPANTSLA LFGGKLFALY ESDIPYAIKL APNGDIITIG SHNFDENLSI NMTAHPKIDP NTNEVFAFRY DPILFPYLTY VRIHPNGVKS
301: HDLPIFSMTR PSFVHDFAIT KNYAIFPDIQ IEMNLLGLIT GGAPVGTNSR KVPRLGVIPR YAIDESEMRW FEVPGFNMMH AINAWEEDNG DTIVVTAPNI
401: LSIEHFLKRL DLVHATIEQV KIDLKTGRVS RNLMSKRNLE LACINRAYIG KKNKYIYAAI ADPLPKAKGV VKLDVSMLEI DQQHDCIVAT RIFGPNCFCS
501: EPFFVPKDHD NVFAVDEDDG YVVCYMHNES TRESSFMVMD AKTHDLEIVA VVKLPHRVPY GFHGIFVKES DLNML
101: PPTECEVVKG TLPPCLNGAY IRNGPNPQYF PRGPFHFFDG DGMLHSTKIS QGKAIFCSRY VKTYKYLVEK KAGYSVIPNV FSDFNSLIAL VIRGAMSITR
201: IIIGQFDPSN GFGPANTSLA LFGGKLFALY ESDIPYAIKL APNGDIITIG SHNFDENLSI NMTAHPKIDP NTNEVFAFRY DPILFPYLTY VRIHPNGVKS
301: HDLPIFSMTR PSFVHDFAIT KNYAIFPDIQ IEMNLLGLIT GGAPVGTNSR KVPRLGVIPR YAIDESEMRW FEVPGFNMMH AINAWEEDNG DTIVVTAPNI
401: LSIEHFLKRL DLVHATIEQV KIDLKTGRVS RNLMSKRNLE LACINRAYIG KKNKYIYAAI ADPLPKAKGV VKLDVSMLEI DQQHDCIVAT RIFGPNCFCS
501: EPFFVPKDHD NVFAVDEDDG YVVCYMHNES TRESSFMVMD AKTHDLEIVA VVKLPHRVPY GFHGIFVKES DLNML
001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL
Arabidopsis Description
CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.