Factsheet for VIT_02s0087g00930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0087g00910.t01	Wine grape	plastid	69.44	68.28
PGSC0003DMT400047548	Potato	cytosol	38.37	59.47
PGSC0003DMT400047553	Potato	plastid	56.54	57.91
TraesCS6A01G271600.1	Wheat	plastid	57.39	52.9
TraesCS6B01G298800.1	Wheat	plastid	57.73	52.88
TraesCS6D01G251800.1	Wheat	plastid	57.22	52.74
HORVU6Hr1G068720.1	Barley	plastid	57.22	52.41
Os02t0704000-01	Rice	plastid	56.03	51.72
VIT_16s0039g01370.t01	Wine grape	plastid	48.39	51.08
KXG30924	Sorghum	plastid	55.18	51.02
Os12t0435200-01	Rice	plastid	49.58	50.69
Zm00001d051556_P001	Maize	plastid	54.84	50.63
Zm00001d017766_P001	Maize	plastid	53.99	49.77
GSMUA_Achr4P19020_001	Banana	plastid	39.73	44.49
VIT_13s0064g00810.t01	Wine grape	cytosol	32.09	37.06
VIT_05s0051g00670.t01	Wine grape	plastid	34.3	35.13
VIT_13s0064g00840.t01	Wine grape	extracellular	32.26	34.8
VIT_10s0003g03750.t01	Wine grape	plastid	35.14	34.21
VIT_19s0093g00550.t01	Wine grape	plastid	35.14	33.99
VIT_04s0008g03510.t01	Wine grape	cytosol	23.77	24.69
VIT_11s0016g02740.t01	Wine grape	cytosol	6.45	20.32
VIT_04s0008g03480.t01	Wine grape	cytosol	23.77	20.14
VIT_04s0008g03450.t01	Wine grape	plastid	12.22	16.67

Protein Annotations

EntrezGene:100252859	wikigene:100252859	MapMan:9.1.6.3.2	ProteinID:AFJ94676	ProteinID:AFJ94676.1	ProteinID:CCB52211
ProteinID:CCB52211.1	InterPro:Carotenoid_Oase	UniProt:F6HJ14	EMBL:FN595769	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	EMBL:JQ712828	EntrezGene:LOC100252859	wikigene:LOC100252859	PFAM:PF03055	PANTHER:PTHR10543
PANTHER:PTHR10543:SF46	TIGR:TC55541	UniParc:UPI00015CC501	ArrayExpress:VIT_02s0087g00930	EnsemblPlantsGene:VIT_02s0087g00930	EnsemblPlants:VIT_02s0087g00930.t01
unigene:Vvi.9281	RefSeq:XP_002270161	RefSeq:XP_002270161.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:18588853..18590786

Molecular Weight (calculated)

65610.8 Da

IEP (calculated)

7.108

GRAVY (calculated)

-0.187

Length

589 amino acids

Sequence
(BLAST)

001: MNPLFCPFLS STLPHPKPLV SPSLTTTRPS SSPYPPFLHI SAIRNVEDKL HSTFYATPTT SQFPEIPTTV ITAKKRPVPS LLVTIFNGLD DFINNFIGPP
101: LPPSIDPKHV LSGNFAPVDE LPPTECEVIE GSLPPCLDGA YIRNGPNPQF YPRGPHHLFD GDGMLHSIRI SHGRPIFCSR YVKTYKYIIE KRAGSPVIPN
201: LFSSYRSFAR SAVAIARLLT GQFDPVNGVG LANTSVAFFC GHLYALAESD LPYAVRLTPD GDIKTLGRYD FDGKLSMSMT AHPKIDPSTG EAFAFRYSPV
301: RPFLTYFRFD AQGKKQPDVP IFSLSCPSFF HDFAITNRYA IFPDIQMWMN PVKMIIRGGS PVGTDPTKVP RVGIIPRYAK DESEMRWIDV PGFNIIHAIN
401: AWDEEDGDAI VMVAPNILPI EHALERMDLV HGSLEKVRID LKTGTVTRHR LSQWNLEFAV INPGYLGKKN RYVYSAVGDP LPKISGIVKL DVSRSDRRQE
501: CIVAKRMYEP GCYGGEPFFV AKEPDNPEAE EDDGYVLSYV HDEQSGKSRF IVMDAQSPDL DIVAAVKLPT RVPYGFHGLF VKGCDLKMD

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.