Factsheet for VIT_13s0064g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0064g00840.t01	Wine grape	extracellular	96.08	89.74
CDY34746	Canola	cytosol	19.8	78.91
CDX93902	Canola	cytosol	80.39	78.1
Solyc01g087250.2.1	Tomato	cytosol, plastid	83.14	77.8
Zm00001d034075_P001	Maize	cytosol	5.49	77.78
CDY53711	Canola	cytosol	80.0	77.71
AT3G63520.1	Thale cress	cytosol	81.76	77.51
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	82.94	77.33
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	80.78	76.3
TraesCS5D01G001900.1	Wheat	cytosol, golgi	80.59	74.86
CDY34748	Canola	endoplasmic reticulum, extracellular	70.59	74.53
TraesCS5A01G001500.2	Wheat	cytosol	79.8	74.27
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	83.53	74.22
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	79.41	73.91
Os12t0640600-01	Rice	plasma membrane	77.65	73.33
Solyc01g087260.2.1	Tomato	plastid	77.84	72.84
OQU93261	Sorghum	cytosol	77.65	72.79
Zm00001d048373_P002	Maize	cytosol, plasma membrane	78.24	72.55
HORVU5Hr1G000320.9	Barley	plastid	80.0	71.96
Bra040449.1-P	Field mustard	cytosol	75.49	70.38
TraesCS5D01G002800.1	Wheat	cytosol	74.71	69.15
TraesCS5B01G001800.1	Wheat	cytosol	73.14	69.07
HORVU4Hr1G006300.1	Barley	cytosol	73.92	67.93
TraesCS5A01G002200.1	Wheat	cytosol	69.41	66.92
TraesCS5A01G002400.1	Wheat	cytosol	73.73	66.79
CDX76782	Canola	mitochondrion	75.88	63.24
Bra007826.1-P	Field mustard	plastid	74.12	63.11
CDX76783	Canola	plastid	74.71	62.36
TraesCS5D01G002900.1	Wheat	plastid	72.55	60.26
CDY34747	Canola	cytosol	15.69	59.26
Bra007825.1-P	Field mustard	plastid	65.49	58.09
VIT_05s0051g00670.t01	Wine grape	plastid	37.84	33.57
VIT_10s0003g03750.t01	Wine grape	plastid	39.02	32.89
VIT_16s0039g01370.t01	Wine grape	plastid	35.69	32.62
VIT_02s0087g00930.t01	Wine grape	plastid	37.06	32.09
VIT_02s0087g00910.t01	Wine grape	plastid	37.65	32.05
VIT_19s0093g00550.t01	Wine grape	plastid	37.25	31.2
VIT_04s0008g03510.t01	Wine grape	cytosol	29.61	26.63
VIT_11s0016g02740.t01	Wine grape	cytosol	8.63	23.53
VIT_04s0008g03480.t01	Wine grape	cytosol	30.0	22.01
VIT_04s0008g03450.t01	Wine grape	plastid	14.51	17.13

Protein Annotations

ArrayExpress:VIT_13s0064g00810	EMBL:FN595509	EnsemblPlants:VIT_13s0064g00810.t01	EnsemblPlantsGene:VIT_13s0064g00810	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055	ProteinID:CCB49515	ProteinID:CCB49515.1
UniParc:UPI000210A6ED	UniProt:F6HB65	MapMan:9.1.6.3.1	:	:	:

Description

No Description!

Coordinates

chr13:+:22587965..22596719

Molecular Weight (calculated)

57852.6 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.250

Length

510 amino acids

Sequence
(BLAST)

001: MYDSSQPLHY LSGNFAPVRD ETPPCKNLPV IGYLPECLNG EFVRVGPNPK FSPVAGYHWF DGDGMIHGLR IKDGKATYVS RYVRTSRLKQ EEYFGGAKFT
101: RFGDLKGLFG LLMVNMQMLR AKLKILDVSY GTGTGNTALV YHHGKLLALS EVDKPYVLKV LEDGDLQTLG LLDYDKRLTH SFTAHPKVDP FTGEMFTFGY
201: SHTPPYITYR VISKDGFMHE PVPITISDPI MMHDFAITEN YAIFMDLPLY FRPKEMVKEK KLIFTFDATK KARFGVLPRY AKNELHIKWF ELPNCFIFHN
301: ANAWEEEDEV VLITCRLENP DLDLVGRNVK EKLENFANEL YEMRFNMKTG IASQRKLSAS SVDFPRVNES YTGRKQRYVY GTILDSIAIL DSIAKVAGII
401: KFDLHAEPDT GKSKLEVGGN VQGIFDLGVG RFGSEAVFVP REPGITSEED DGYLIFFVHD EKTGKSYVNV INAKTMSPDP VAIVELPNRV PYGFHAFFVT
501: EEQLKEQAKL

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.