Factsheet for VIT_04s0008g03510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02740.t01	Wine grape	cytosol	25.4	77.01
VIT_04s0008g03480.t01	Wine grape	cytosol	76.19	62.16
Solyc08g066720.1.1	Tomato	cytosol	43.39	59.42
KRH52736	Soybean	mitochondrion, plastid	60.32	58.26
KRH62063	Soybean	cytosol	49.03	57.56
KRH52732	Soybean	plastid	56.44	55.08
KRH62062	Soybean	cytosol, plastid	55.03	53.89
PGSC0003DMT400011006	Potato	cytosol	53.62	50.08
PGSC0003DMT400011015	Potato	plastid	52.2	48.29
Os06t0162550-00	Rice	mitochondrion, plastid	46.91	46.5
KXG19379	Sorghum	mitochondrion, plastid	47.62	45.38
VIT_04s0008g03450.t01	Wine grape	plastid	33.51	43.98
Zm00001d045232_P001	Maize	plastid	46.21	42.74
VIT_13s0064g00810.t01	Wine grape	cytosol	26.63	29.61
VIT_13s0064g00840.t01	Wine grape	extracellular	27.16	28.21
VIT_16s0039g01370.t01	Wine grape	plastid	23.46	23.84
VIT_02s0087g00930.t01	Wine grape	plastid	24.69	23.77
VIT_05s0051g00670.t01	Wine grape	plastid	23.99	23.65
VIT_02s0087g00910.t01	Wine grape	plastid	24.87	23.54
VIT_10s0003g03750.t01	Wine grape	plastid	24.87	23.31
VIT_19s0093g00550.t01	Wine grape	plastid	24.87	23.15

Protein Annotations

EntrezGene:100254294	wikigene:100254294	MapMan:35.1	ProteinID:CBI20860	ProteinID:CBI20860.3	InterPro:Carotenoid_Oase
UniProt:D7SUB1	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016702	GO:GO:0046872
GO:GO:0055114	EntrezGene:LOC100254294	wikigene:LOC100254294	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF30
UniParc:UPI00015C8759	ArrayExpress:VIT_04s0008g03510	EnsemblPlantsGene:VIT_04s0008g03510	EnsemblPlants:VIT_04s0008g03510.t01	RefSeq:XP_002281333	RefSeq:XP_002281333.2

Description

No Description!

Coordinates

chr4:+:2883265..2886368

Molecular Weight (calculated)

63722.7 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.335

Length

567 amino acids

Sequence
(BLAST)

001: MKDLLKTSLR ADVSKTIKNT SQRILDAFVD SVFQFVDQPL LPSQKNFAPV EEIGEDVEVI CNEGNVPADF PEGIYIRNGP NPLFGGLKST VSVFGRTSHI
101: WIEGEGMLHA LYFMKNAHGD WSISYKNRYV ESETFKIEKQ GNKPAFVPTI EGDSPAILAA ALLNMLRFGM VSKQISNTSI FEHSGKFYAS AENHLPQEID
201: IFTLETFDKG DVNGAWDRAF TSHPKKDPRN GELVIMGIDA VKPFFVVGVV SEDGKKLSHK VDLKFDRATL IHELGITEKY TVIMDFPLTI DINRLINGGP
301: LIKYDKEGYA RIGVMPRYGN ADSVQWFEVE KHCLFHNFNS FEDGNEVVIR GCRSPAAFIP GPDNGLNKFE WFSKGLKPIE TFKESSTGST QEGFLFARVC
401: EWRLNMETGE VKERNLTGTD FPMDFPMINE HFRGVKQKYG YTQVRDCMAS SSCGMSKYGS LAKLYFEESD SKLSVKEGKG EHLIKVEYNR FAENNFCSGS
501: VFVPKGGSSE EDDSWIVSFV HNEDTDVSQV HIIDAQKFSS KPIAKITLPQ RVPYGFHGIF ITMPHQA

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.