Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011006 | Potato | cytosol | 87.11 | 87.97 |
| VIT_11s0016g02740.t01 | Wine grape | cytosol | 17.62 | 57.75 |
| KRH52736 | Soybean | mitochondrion, plastid | 54.98 | 57.41 |
| KRH62063 | Soybean | cytosol | 42.41 | 53.83 |
| KRH52732 | Soybean | plastid | 50.9 | 53.7 |
| KRH62062 | Soybean | cytosol, plastid | 50.24 | 53.2 |
| VIT_04s0008g03510.t01 | Wine grape | cytosol | 48.29 | 52.2 |
| VIT_04s0008g03480.t01 | Wine grape | cytosol | 51.06 | 45.04 |
| Os06t0162550-00 | Rice | mitochondrion, plastid | 39.48 | 42.31 |
| KXG19379 | Sorghum | mitochondrion, plastid | 40.13 | 41.34 |
| Zm00001d045232_P001 | Maize | plastid | 38.01 | 38.01 |
| VIT_04s0008g03450.t01 | Wine grape | plastid | 25.12 | 35.65 |
| PGSC0003DMT400071048 | Potato | cytosol, mitochondrion | 23.16 | 28.06 |
| PGSC0003DMT400004978 | Potato | cytosol, mitochondrion, peroxisome | 10.28 | 26.25 |
| PGSC0003DMT400047548 | Potato | cytosol | 15.5 | 25.0 |
| PGSC0003DMT400039054 | Potato | plastid | 23.65 | 25.0 |
| PGSC0003DMT400049305 | Potato | cytosol | 20.07 | 24.16 |
| PGSC0003DMT400047553 | Potato | plastid | 22.02 | 23.48 |
| PGSC0003DMT400004981 | Potato | plastid | 22.51 | 23.35 |
| PGSC0003DMT400004975 | Potato | plastid | 10.77 | 19.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400011015 | EnsemblPlantsGene:PGSC0003DMG400004312 | EntrezGene:102600865 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 | InterPro:Carotenoid_Oase |
| PANTHER:PTHR10543 | PANTHER:PTHR10543:SF30 | PFAM:PF03055 | PGSC:PGSC0003DMG400004312 | RefSeq:XP_015170031.1 | SEG:seg |
| UniParc:UPI000294ABE2 | UniProt:M0ZYX6 | MapMan:35.1 | : | : | : |
Description
9-cis-epoxycarotenoid dioxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400004312]
Coordinates
chr8:+:39213385..39218093
Molecular Weight (calculated)
69223.8 Da
IEP (calculated)
6.603
GRAVY (calculated)
-0.307
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANSYSLLQ VVTKCSLQKP SRPTKLEHSR NPLSSTFKPI LLRELDHFPN ISLDVPKAIK DASFNLLEAF VDFICEFVDQ PLLPSKSNFA PVEEMIEGTT
101: VGIVEGKIPD DFPEGVYVRN GTLDFFLRPN PLFGGLKSTR SIFGESSHMW IEGEGMVHAL YLNKENGGKW KALYKNKHVQ TDSYNMEKDR KKPGFLPAIQ
201: GDSNAILLSY LLNLLRFGVT DKSLSNSNVF EHGNKYYSIA ENHMPQEIDI HSLQTKGNWN ILSGSWNRPF TSHPKKAPGT GELVIIGIDG KKPYMELGVI
301: SADGKKMVHK ADLMFDRCTV CHEIGVTQRY NVIMNFPLIV DISQLVLGGQ LMKFEKDGYA RIGIMPRYGD ANSIKWFEVN PCSVFHIINC FELNDEVVVR
401: ACEARQSVIP GPSSSINHFD KFSKWLKRET SSTNGDSHEF TKESTFSRVC EWRLNMKTGQ VKEKKNIFGD EFVMEFPFIN ENISGFRNKF AYLQVVESTE
501: VSGSGFSKFG GLIKVHYEEK KTFNMDEEDE LIKAEYHMFP KNTFCSGASF VPKLGGIDED DGWIITFTHN ENENISQVCI IDAKKFTEEP VAIITLSSRV
601: PYGFHGAFMP LTS
101: VGIVEGKIPD DFPEGVYVRN GTLDFFLRPN PLFGGLKSTR SIFGESSHMW IEGEGMVHAL YLNKENGGKW KALYKNKHVQ TDSYNMEKDR KKPGFLPAIQ
201: GDSNAILLSY LLNLLRFGVT DKSLSNSNVF EHGNKYYSIA ENHMPQEIDI HSLQTKGNWN ILSGSWNRPF TSHPKKAPGT GELVIIGIDG KKPYMELGVI
301: SADGKKMVHK ADLMFDRCTV CHEIGVTQRY NVIMNFPLIV DISQLVLGGQ LMKFEKDGYA RIGIMPRYGD ANSIKWFEVN PCSVFHIINC FELNDEVVVR
401: ACEARQSVIP GPSSSINHFD KFSKWLKRET SSTNGDSHEF TKESTFSRVC EWRLNMKTGQ VKEKKNIFGD EFVMEFPFIN ENISGFRNKF AYLQVVESTE
501: VSGSGFSKFG GLIKVHYEEK KTFNMDEEDE LIKAEYHMFP KNTFCSGASF VPKLGGIDED DGWIITFTHN ENENISQVCI IDAKKFTEEP VAIITLSSRV
601: PYGFHGAFMP LTS
001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
Arabidopsis Description
CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.