Factsheet for VIT_04s0008g03450.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0008g03510.t01	Wine grape	cytosol	43.98	33.51
VIT_04s0008g03480.t01	Wine grape	cytosol	47.69	29.64
KRH62063	Soybean	cytosol	32.64	29.19
KRH52736	Soybean	mitochondrion, plastid	38.89	28.62
Solyc08g066720.1.1	Tomato	cytosol	26.62	27.78
KRH52732	Soybean	plastid	37.04	27.54
KRH62062	Soybean	cytosol, plastid	36.81	27.46
PGSC0003DMT400011006	Potato	cytosol	37.27	26.52
PGSC0003DMT400011015	Potato	plastid	35.65	25.12
Os06t0162550-00	Rice	mitochondrion, plastid	31.25	23.6
KXG19379	Sorghum	mitochondrion, plastid	29.86	21.68
Zm00001d045232_P001	Maize	plastid	29.4	20.72
VIT_13s0064g00810.t01	Wine grape	cytosol	17.13	14.51
VIT_13s0064g00840.t01	Wine grape	extracellular	18.06	14.29
VIT_19s0093g00550.t01	Wine grape	plastid	18.98	13.46
VIT_05s0051g00670.t01	Wine grape	plastid	17.59	13.22
VIT_16s0039g01370.t01	Wine grape	plastid	16.44	12.72
VIT_10s0003g03750.t01	Wine grape	plastid	17.36	12.4
VIT_02s0087g00910.t01	Wine grape	plastid	17.13	12.35
VIT_02s0087g00930.t01	Wine grape	plastid	16.67	12.22
VIT_11s0016g02740.t01	Wine grape	cytosol	3.47	8.02

Protein Annotations

MapMan:35.2	ProteinID:CCB46703	ProteinID:CCB46703.1	InterPro:Carotenoid_Oase	UniProt:F6H3D9	EMBL:FN595231
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	PFAM:PF03055
PANTHER:PTHR10543	PANTHER:PTHR10543:SF30	UniParc:UPI000210A960	ArrayExpress:VIT_04s0008g03450	EnsemblPlantsGene:VIT_04s0008g03450	EnsemblPlants:VIT_04s0008g03450.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:2863132..2867051

Molecular Weight (calculated)

48292.0 Da

IEP (calculated)

7.710

GRAVY (calculated)

-0.069

Length

432 amino acids

Sequence
(BLAST)

001: MASTCFALQV NGSADKLSIS HNFGHLKTSL SDTVKKPVLK ESQKMSLRVD IFKTIRNTSR RMLDAFVDSV FQFIDQQLFP SQKNFAPVDE IGEAVQVVCS
101: EGRFPVGIYI RNVRNSATQA FLSIRGGTTL SQRTTSLKRL TYSLWRPWRS GISTEIGTGL SLAIQRLIKY DKGDSARIGV MARYGDADSV RWFSVESHCT
201: FHIVNSFEDG DEAIQKTIAI PLIFIQPFLV GLLSLNLIFL LINQEQVVIR GCRALDSIIP GPNQGLNKPN ENSISLAKDE DLFTRVYEWR LNMETGEVKE
301: KNLTGMDFCM DFPLINGEII LALSTSLPKC GGIAKIFFEE QDSMLPKNGQ RMKVKCHSFG ENSFCTGSAF ASKVGSCVED DGWIVSFVHI ENTDVSQYFM
401: RVFGSTRLLS SSEVLTGVYS DHFPTWGSAW IR

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.