Factsheet for VIT_05s0051g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049305	Potato	cytosol	60.7	68.57
Solyc05g053530.1.1	Tomato	plastid	64.0	63.12
Bra015002.1-P	Field mustard	plastid	62.78	61.71
CDX77467	Canola	plastid	62.78	61.71
CDX85148	Canola	cytosol	62.26	61.2
AT3G24220.1	Thale cress	plastid	60.0	59.79
GSMUA_Achr8P12840_001	Banana	plastid	59.65	59.55
GSMUA_Achr5P15630_001	Banana	plastid	58.09	56.13
VIT_10s0003g03750.t01	Wine grape	plastid	55.83	53.06
VIT_19s0093g00550.t01	Wine grape	plastid	55.48	52.38
TraesCS2A01G012300.1	Wheat	mitochondrion, plastid	51.65	52.38
TraesCS2D01G013000.1	Wheat	cytosol	54.43	51.91
Os04t0131800-00	Rice	extracellular	14.61	48.55
VIT_13s0064g00810.t01	Wine grape	cytosol	33.57	37.84
VIT_13s0064g00840.t01	Wine grape	extracellular	34.43	36.26
VIT_02s0087g00930.t01	Wine grape	plastid	35.13	34.3
VIT_02s0087g00910.t01	Wine grape	plastid	34.26	32.89
VIT_16s0039g01370.t01	Wine grape	plastid	30.96	31.9
VIT_04s0008g03510.t01	Wine grape	cytosol	23.65	23.99
VIT_11s0016g02740.t01	Wine grape	cytosol	7.48	22.99
VIT_04s0008g03480.t01	Wine grape	cytosol	24.52	20.29
VIT_04s0008g03450.t01	Wine grape	plastid	13.22	17.59

Protein Annotations

EntrezGene:100244362	wikigene:100244362	MapMan:11.1.1.4	ProteinID:CCB57517	ProteinID:CCB57517.1	InterPro:Carotenoid_Oase
UniProt:F6HS58	EMBL:FN596241	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009639	GO:GO:0010114
GO:GO:0016020	GO:GO:0016702	GO:GO:0045549	GO:GO:0046872	GO:GO:0055114	EntrezGene:LOC100244362
wikigene:LOC100244362	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF48	UniParc:UPI00015C7CD1	ArrayExpress:VIT_05s0051g00670
EnsemblPlantsGene:VIT_05s0051g00670	EnsemblPlants:VIT_05s0051g00670.t01	RefSeq:XP_002283185	RefSeq:XP_002283185.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:11589343..11591102

Molecular Weight (calculated)

63141.2 Da

IEP (calculated)

8.124

GRAVY (calculated)

-0.202

Length

575 amino acids

Sequence
(BLAST)

001: MQASPGFSST AITSAPESPA PTKLHPPPSK LLIQTSNPPL PLKLIAPLTS PLATKWPSHL NPLQKLAASA LDMVECFLIH RLDNKHTLPK PLDPAVQLVG
101: NFAPVRECPV QHDLQVLGQL PPALRGVYLR NGANPMLSPA GGHHLFDGDG MIHAVTLGPG NRASYSCRFT RTSRLVQEAA LGRPLFPKPI GELHGHSGIA
201: RLALFYARAA VGLVDGSRGT GVANAGLVYF NGRLLAMSED DLPYHVKIKG DGDLETTGRF DFSGQMDRPM IAHPKVDPIT GELFSLSYNV VKKPYLKYYK
301: FGTCGEKSRE VSISLQQPTI IHDFALTETS VVIPDHQVVF KLSEMVRGGS PVIHDPNKIS RFGVLPRNDP DESRIQWIDV PDCFCFHLWN AWDERSSSGD
401: RIVVVIGSCM SPADSIFKER VDPLRSELSE IRLNLTTGGS SRRVIVAGMN LEAGQVDKRR LGRRTRYIYL AIAEPWPKCS GMAKVDLVTG EVTKMMYGEG
501: RFGGEACFVG EEEGGEGEGW LMSIVRDEKR ERSELIVVEA DDIKQVASVR LPTRVPYGFH GTFVDSQQLR AQRVC

Best Arabidopsis Sequence Match ( AT3G24220.1 )
(BLAST)

001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF

Arabidopsis Description

NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.