Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P12840_001 | Banana | plastid | 69.92 | 72.22 |
| Os04t0131800-00 | Rice | extracellular | 18.15 | 62.43 |
| PGSC0003DMT400049305 | Potato | cytosol | 51.93 | 60.71 |
| VIT_05s0051g00670.t01 | Wine grape | plastid | 56.13 | 58.09 |
| Bra015002.1-P | Field mustard | plastid | 54.96 | 55.9 |
| CDX77467 | Canola | plastid | 54.96 | 55.9 |
| CDX85148 | Canola | cytosol | 54.79 | 55.73 |
| GSMUA_Achr4P22870_001 | Banana | plastid | 56.13 | 55.57 |
| GSMUA_Achr6P31180_001 | Banana | plastid | 56.3 | 55.56 |
| TraesCS2A01G012300.1 | Wheat | mitochondrion, plastid | 52.6 | 55.2 |
| GSMUA_Achr2P12950_001 | Banana | plastid | 54.29 | 54.84 |
| GSMUA_Achr5P02570_001 | Banana | plastid | 55.97 | 54.59 |
| TraesCS2D01G013000.1 | Wheat | cytosol | 55.13 | 54.39 |
| GSMUA_Achr4P31460_001 | Banana | plastid | 54.96 | 54.23 |
| AT3G24220.1 | Thale cress | plastid | 52.44 | 54.07 |
| Solyc05g053530.1.1 | Tomato | plastid | 52.94 | 54.03 |
| GSMUA_Achr7P01250_001 | Banana | plastid | 54.62 | 53.9 |
| GSMUA_Achr3P29770_001 | Banana | cytosol, plasma membrane | 32.77 | 35.65 |
| GSMUA_Achr4P19020_001 | Banana | plastid | 27.39 | 30.99 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P15630_001 | EnsemblPlants:GSMUA_Achr5T15630_001 | EnsemblPlantsGene:GSMUA_Achr5G15630_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 | InterPro:Carotenoid_Oase |
| PANTHER:PTHR10543 | PANTHER:PTHR10543:SF48 | PFAM:PF03055 | SEG:seg | UniParc:UPI0002950D02 | UniProt:M0SYU2 |
| MapMan:11.1.1.4 | : | : | : | : | : |
Description
9-cis-epoxycarotenoid dioxygenase 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G15630_001]
Coordinates
chr5:+:11659250..11661037
Molecular Weight (calculated)
65303.8 Da
IEP (calculated)
7.837
GRAVY (calculated)
-0.364
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQSCIRLSN HVTATHPRKF RRSTTGCRNF LSPSVAVPKE LSRKNDAPHT PPPPPPTPRP PKAPAEHPTP ISTVAPFNPV QIVVARTIDA IESGIIVELE
101: KRRPLPRSAD PAVQISGNFA PVPESLPEYG IEVVGRIPPD LHGVYLRNGA NPMFTPTGGH HLFDGDGMIH AVTLSGPTEA SYACRFTRTS RLSQEAAIGR
201: AVFPKAIGEL HGHTGIARLA FFGLRAAAGI VDLTKGSGVA NAGLTYFGGR LLAMSENDLP YHVRLTPDGD LETAGRFDFS GQLNSTMIAH PKIDPLTGEL
301: FALSYDVARK PYLKYFHVDS KSGKKSADVA INLKQPTMIH DFAITENYAI IPDQQVVFDL KQMLHGRSPV QCDGRKTPRF GVLPRYDDDV SRIQWIDVPG
401: CFCFHLWNAW EEPSCGGDGR TVVIIGSCMS PPDAIFSDED DSRPTRSVLS EIRLDLGTGQ SSRREIANGM NLEAGQVNRD RLGRRTRFAY LAMAEPWPRC
501: SGVAKVDLET GEVRRFEYGH GRFGGEPTFI PARRGSEEDD GHVVGFVRDE RRGESELVIV NGSTMELEAT VRMPSRVPYG FHGTFVRADE LRGQK
101: KRRPLPRSAD PAVQISGNFA PVPESLPEYG IEVVGRIPPD LHGVYLRNGA NPMFTPTGGH HLFDGDGMIH AVTLSGPTEA SYACRFTRTS RLSQEAAIGR
201: AVFPKAIGEL HGHTGIARLA FFGLRAAAGI VDLTKGSGVA NAGLTYFGGR LLAMSENDLP YHVRLTPDGD LETAGRFDFS GQLNSTMIAH PKIDPLTGEL
301: FALSYDVARK PYLKYFHVDS KSGKKSADVA INLKQPTMIH DFAITENYAI IPDQQVVFDL KQMLHGRSPV QCDGRKTPRF GVLPRYDDDV SRIQWIDVPG
401: CFCFHLWNAW EEPSCGGDGR TVVIIGSCMS PPDAIFSDED DSRPTRSVLS EIRLDLGTGQ SSRREIANGM NLEAGQVNRD RLGRRTRFAY LAMAEPWPRC
501: SGVAKVDLET GEVRRFEYGH GRFGGEPTFI PARRGSEEDD GHVVGFVRDE RRGESELVIV NGSTMELEAT VRMPSRVPYG FHGTFVRADE LRGQK
001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
Arabidopsis Description
NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.