Factsheet for GSMUA_Achr2P12950_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P02560_001
GSMUA_Achr7P21740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	GSMUA_Achr7P02560_001	AT5G17790.1	15340011
AT1G30100.1	GSMUA_Achr7P21740_001	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P02570_001	Banana	plastid	82.0	79.18
GSMUA_Achr4P22870_001	Banana	plastid	79.12	77.54
GSMUA_Achr7P01250_001	Banana	plastid	77.42	75.62
GSMUA_Achr4P31460_001	Banana	plastid	75.04	73.3
Zm00001d023690_P001	Maize	cytosol	16.13	72.52
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	61.97	72.13
Zm00001d027690_P001	Maize	cytosol	9.34	71.43
GSMUA_Achr6P31180_001	Banana	plastid	73.01	71.31
CDX82482	Canola	cytosol	47.71	70.96
Zm00001d008638_P001	Maize	cytosol	9.85	70.73
Bra001552.1-P	Field mustard	cytosol	47.54	70.71
CDY57471	Canola	cytosol	47.37	70.45
CDX98456	Canola	cytosol	30.39	70.2
Os12t0617400-01	Rice	cytosol	33.28	69.26
CDY39117	Canola	mitochondrion	62.65	66.73
Bra012603.1-P	Field mustard	cytosol	49.75	66.29
Zm00001d031086_P001	Maize	plastid	63.67	65.91
OQU88453	Sorghum	plastid	63.84	65.62
Zm00001d018819_P001	Maize	plastid	63.84	65.62
Zm00001d007876_P001	Maize	plastid	63.33	64.87
Zm00001d033222_P001	Maize	extracellular	66.38	64.74
VIT_19s0093g00550.t01	Wine grape	plastid	66.89	64.7
PGSC0003DMT400039054	Potato	plastid	63.67	64.66
Zm00001d013689_P001	Maize	plastid	65.87	64.56
TraesCS5A01G374000.1	Wheat	plastid	64.69	64.47
TraesCS5D01G383500.1	Wheat	plastid	65.03	64.37
TraesCS5B01G375900.1	Wheat	plastid	64.86	64.2
Solyc08g016720.1.1	Tomato	plastid	63.33	64.2
Os07t0154100-01	Rice	plastid	62.82	63.57
EER93751	Sorghum	plastid	65.87	63.5
Zm00001d041319_P001	Maize	plastid	65.03	63.41
Os03t0645900-00	Rice	plastid	65.36	63.32
TraesCS2D01G251600.1	Wheat	plastid	62.48	63.23
VIT_10s0003g03750.t01	Wine grape	plastid	64.86	63.14
CDY33218	Canola	plastid	63.84	62.88
Solyc07g056570.1.1	Tomato	plastid	64.52	62.81
Bra027336.1-P	Field mustard	plastid	63.5	62.65
Bra021558.1-P	Field mustard	plastid	63.5	62.54
CDX97576	Canola	plastid	63.33	62.48
CDX98455	Canola	plastid	63.33	62.48
Zm00001d000095_P001	Maize	cytosol	17.32	62.2
HORVU5Hr1G008050.1	Barley	plastid	63.84	61.94
TraesCS2B01G268400.1	Wheat	plastid	62.48	61.74
HORVU5Hr1G054970.1	Barley	cytosol	63.67	61.68
TraesCS5D01G038800.1	Wheat	plastid	64.18	61.46
TraesCS5B01G029300.1	Wheat	plastid	64.01	61.4
AT3G14440.1	Thale cress	plastid	62.14	61.1
Bra032359.1-P	Field mustard	plastid	60.95	61.05
Zm00001d000157_P001	Maize	cytosol	10.87	60.95
AT1G30100.1	Thale cress	plastid	60.95	60.95
CDY26294	Canola	plastid	60.95	60.95
CDY61838	Canola	plastid	60.44	60.44
TraesCS2A01G250600.1	Wheat	plastid	60.78	60.37
CDX88443	Canola	plastid	60.78	59.47
Bra013298.1-P	Field mustard	plastid	58.57	59.38
CDX78842	Canola	plastid	58.57	59.38
HORVU5Hr1G092850.2	Barley	plastid	64.86	59.32
Bra035033.1-P	Field mustard	plastid	60.61	59.3
CDY52448	Canola	plastid	60.44	59.14
CDX99475	Canola	plastid	58.06	58.86
Bra008358.1-P	Field mustard	plastid	58.57	58.77
CDY55629	Canola	cytosol, plastid	58.06	58.66
AT4G18350.1	Thale cress	cytosol, plastid	57.89	58.49
HORVU5Hr1G044510.1	Barley	cytosol	59.42	58.33
CDY01534	Canola	cytosol, plastid	57.73	58.32
GSMUA_Achr8P12840_001	Banana	plastid	55.52	56.77
CDX98457	Canola	plastid	29.03	54.29
GSMUA_Achr5P15630_001	Banana	plastid	54.84	54.29
AT1G78390.1	Thale cress	cytosol, plastid	60.27	54.03
Zm00001d042076_P001	Maize	cytosol, plastid	36.5	51.19
Zm00001d023458_P001	Maize	cytosol	11.54	48.23
Zm00001d022623_P001	Maize	cytosol	30.22	47.72
KRH45171	Soybean	plastid	12.22	43.64
Zm00001d035724_P001	Maize	plastid	42.61	39.53
Zm00001d019813_P001	Maize	plastid	11.88	37.04
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	34.3	36.93
Zm00001d009286_P001	Maize	plastid	12.39	28.97
GSMUA_Achr4P19020_001	Banana	plastid	25.47	28.52
Zm00001d033377_P001	Maize	plastid	12.73	26.41
Zm00001d027592_P001	Maize	mitochondrion	18.17	25.12

Protein Annotations

EnsemblPlants:GSMUA_Achr2P12950_001	EnsemblPlants:GSMUA_Achr2T12950_001	EnsemblPlantsGene:GSMUA_Achr2G12950_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	SEG:seg	UniParc:UPI000296108C	UniProt:M0S7I6
MapMan:11.1.1.4	:	:	:	:	:

Description

9-cis-epoxycarotenoid dioxygenase 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr2G12950_001]

Coordinates

chr2:-:15240881..15242650

Molecular Weight (calculated)

65242.9 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.242

Length

589 amino acids

Sequence
(BLAST)

001: MTSTAKPISK PLQCSTPLAT QSVKLTRNKT SSLTTLRVHC SAPADSLNFP PNTRPVYGAG PYCKKATTSI AKEWSLLQRL AAAALDAVED GLISNMLERP
101: RPLPKTADPA VQIAGNFAPV DERAPCHDLP VQGLIPPFVD GVYVRNGANP LFEPVAGHHF FDGDGMVHAV HIHDGTAAYA CRYTKTERLR QERAIGKPVF
201: PKAIGELHGH SGIARLLLFY ARCLFGLVDG GRGIGVANAG LIYFNDRLLA MSEDDVPYHV RVTRSGDLET VERYDFGGQL RSSMIAHPKL DPASRELFAL
301: SYDVIRKPYL KYFYFSPDGN KSPDVDIPVD KPTMIHDFAI TENHVVVPDQ QVVFELQEMF RGGSPVVYDR AKTTRFGVLP KYAADAAEMR WVVVPDCFCF
401: HLWNAWEEPA TGEVVVIGSC MTPPDSVFNE CEENLASVLS EIRLDLRTGE SKRRPILSPD NQPNLEAGMV NRNRLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LFTGEMSKFV FGDGRYGGEP YFVARDPNSP KEDDGCVLTF MHDEKTSESE LLIVDAADMR LEAAVKLPWR VPYGFHGTFI SSRELESQA

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.