Factsheet for GSMUA_Achr8P12840_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15630_001	Banana	plastid	72.22	69.92
PGSC0003DMT400049305	Potato	cytosol	54.34	61.49
VIT_05s0051g00670.t01	Wine grape	plastid	59.55	59.65
GSMUA_Achr4P22870_001	Banana	plastid	59.38	56.91
Os04t0131800-00	Rice	extracellular	17.01	56.65
CDX85148	Canola	cytosol	57.12	56.24
Bra015002.1-P	Field mustard	plastid	56.94	56.07
CDX77467	Canola	plastid	56.94	56.07
GSMUA_Achr7P01250_001	Banana	plastid	58.68	56.05
TraesCS2A01G012300.1	Wheat	mitochondrion, plastid	54.86	55.73
GSMUA_Achr6P31180_001	Banana	plastid	58.33	55.72
Solyc05g053530.1.1	Tomato	plastid	56.25	55.57
GSMUA_Achr2P12950_001	Banana	plastid	56.77	55.52
AT3G24220.1	Thale cress	plastid	55.38	55.29
TraesCS2D01G013000.1	Wheat	cytosol	57.81	55.22
GSMUA_Achr5P02570_001	Banana	plastid	58.16	54.92
GSMUA_Achr4P31460_001	Banana	plastid	57.47	54.89
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	34.9	36.75
GSMUA_Achr4P19020_001	Banana	plastid	28.3	30.99

Protein Annotations

EnsemblPlants:GSMUA_Achr8P12840_001	EnsemblPlants:GSMUA_Achr8T12840_001	EnsemblPlantsGene:GSMUA_Achr8G12840_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF48	PFAM:PF03055	UniParc:UPI000296CD27	UniProt:M0TPY7	MapMan:11.1.1.4

Description

9-cis-epoxycarotenoid dioxygenase 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G12840_001]

Coordinates

chr8:+:9600459..9602189

Molecular Weight (calculated)

63111.5 Da

IEP (calculated)

6.983

GRAVY (calculated)

-0.188

Length

576 amino acids

Sequence
(BLAST)

001: MAQASLRVSP SLHFPHTESA PPQKPLVSPS RRDLLIPRFR TPLSQPLVSS APPLNPVQKV LASILDAVES GIVAGLEGKR PLPRSVDPAV QISGNFTPVP
101: ESPPVHGLEV TGRIPPALFG VYVRNGANPM FPPAGGHHLF DGDGMIHAVS LSGPADASYS CRYTRTSRLL QEAALGRTLF PKAIGELHGH SGIARLALFY
201: LRTAAGIVNP ANGTGVANAG LVYFGGRLLA MSEDDLPYHV RVTADGDLET VGRHSFAGQQ VTSMIAHPKI DPVSGELFAL SYDVICKPYL KYFYVHPMTG
301: KKSADVAITL RQPTMIHDFA ITENYAIIPD QQVVFELSRM LHGGSPVRCD RSKTPRFGVL PRYDSDESRI RWIDVPGCFC FHLWNAWEET CREGKGRTVV
401: IIGSCMSPPD AIFSDVEDAA GPIRTVLSEI RLDLETEESS RREIAPGLNL EAGQINRARL GRKTRFAYLA IAEPWPRCGG VAKVDLETGE VRRFDYGDDR
501: FGGEPMFVPL RADGSGEEDE GFVVKFVHDE SRGMSQLLIV NGRSMDLEAT VRLPSRVPYG FHGTFVRSDD LRWQQQ

Best Arabidopsis Sequence Match ( AT3G24220.1 )
(BLAST)

001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF

Arabidopsis Description

NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.