Factsheet for GSMUA_Achr4P19020_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P09310_001
GSMUA_Achr4P01080_001
GSMUA_Achr7P02560_001
GSMUA_Achr7P21740_001
GSMUA_Achr8P27570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	GSMUA_Achr7P02560_001	AT5G17790.1	15340011
AT4G19170.1	GSMUA_Achr7P21740_001	AT5G17790.1	15340011
AT4G19170.1	GSMUA_Achr2P09310_001	AT5G56760.1	21798944
AT4G19170.1	GSMUA_Achr4P01080_001	AT5G56760.1	21798944
AT4G19170.1	GSMUA_Achr8P27570_001	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013378.1-P	Field mustard	peroxisome	42.02	43.85
PGSC0003DMT400047548	Potato	cytosol	31.37	43.42
Zm00001d051556_P001	Maize	plastid	52.09	42.95
KXG30924	Sorghum	plastid	51.71	42.7
Zm00001d017766_P001	Maize	plastid	51.52	42.41
Os02t0704000-01	Rice	plastid	51.14	42.16
VIT_02s0087g00910.t01	Wine grape	plastid	47.34	41.57
TraesCS6A01G271600.1	Wheat	plastid	49.81	41.0
TraesCS6D01G251800.1	Wheat	plastid	49.62	40.85
TraesCS6B01G298800.1	Wheat	plastid	49.81	40.75
CDX78923	Canola	plastid	46.01	40.6
HORVU6Hr1G068720.1	Barley	plastid	49.62	40.59
AT4G19170.1	Thale cress	plastid	45.82	40.5
CDX99397	Canola	plastid	45.63	40.47
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	18.44	40.42
KRH76475	Soybean	plastid	45.06	40.17
PGSC0003DMT400004981	Potato	plastid	44.68	39.76
VIT_02s0087g00930.t01	Wine grape	plastid	44.49	39.73
CDX76489	Canola	plastid	39.73	39.29
Solyc08g075490.2.1	Tomato	plastid	44.3	39.23
Bra020970.1-P	Field mustard	plastid	41.25	38.27
Os12t0435200-01	Rice	plastid	40.68	37.15
Solyc08g075480.2.1	Tomato	plastid	40.49	36.92
VIT_16s0039g01370.t01	Wine grape	plastid	37.07	34.95
PGSC0003DMT400047553	Potato	plastid	37.26	34.09
PGSC0003DMT400004975	Potato	plastid	21.48	33.04
GSMUA_Achr8P12840_001	Banana	plastid	30.99	28.3
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	29.09	27.97
GSMUA_Achr5P15630_001	Banana	plastid	30.99	27.39
GSMUA_Achr6P31180_001	Banana	plastid	30.61	26.7
GSMUA_Achr2P12950_001	Banana	plastid	28.52	25.47
GSMUA_Achr7P01250_001	Banana	plastid	29.09	25.37
GSMUA_Achr5P02570_001	Banana	plastid	29.28	25.25
GSMUA_Achr4P22870_001	Banana	plastid	28.52	24.96
GSMUA_Achr4P31460_001	Banana	plastid	28.52	24.88

Protein Annotations

MapMan:35.1	InterPro:Carotenoid_Oase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0010287	GO:GO:0016491	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G19020_001	EnsemblPlants:GSMUA_Achr4P19020_001	EnsemblPlants:GSMUA_Achr4T19020_001	UniProt:M0SQ65	PFAM:PF03055
PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	UniParc:UPI00029679A9	SEG:seg	:	:

Description

Putative Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G19020_001]

Coordinates

chr4:-:20075367..20077445

Molecular Weight (calculated)

56856.2 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.239

Length

526 amino acids

Sequence
(BLAST)

001: MDVLLISSSS SVSATSRRLR MLGPSRLPPP TSSSFPPRSF LRISAVRIEE KPRAAEPKTK TAPTSTATTT TTTTPQHQCH EYEQHPPRRR PFATHSTSSS
101: ITSLIHPFSV PPSIHATSCP TTSLQWTSFL RHPVPWSAAP YHAASPEAPT SVTDPTLSTY PEGLIISSTG TACSTRSFSP RQGATEWPPP SSAPATFALT
201: GTSSSAMRAP LSSPAYSPPS TEPLGVGLAN TSLAFFGGRL YALGESDLPY AVRVSSDDGD VATLGRCDFE GRLFMGMTAH PKKDPVTGEL FAFRYGPVPP
301: FLTYFWFDSD GNKSGDDVPI FSMRQPSFLH DFAITERYAI FPDLQIVMKP MDMVLGGGAP VGSDNGKLVH SCLEMVRIDL RSGAVSRTPM SAANIDFGVI
401: NPRYMGRKNR YAYLGVGDPM PKISGVVKLD LTLAGKSDCV VARRDFGSTC FGGEPFFVAD GEREGEDEGY VVSYVHDEGS GESRFVVMDA RSPDLDIVAE
501: VLLPHRVPYG FHGLFVSQAE LRSQRP

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.