CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70775
CDX78760
CDX88588
CDY11904
CDY16887
CDY32760
CDY32882
CDY38459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	CDX70775	AT5G17790.1	15340011
AT4G19170.1	CDX78760	AT5G17790.1	15340011
AT4G19170.1	CDY16887	AT5G17790.1	15340011
AT4G19170.1	CDY38459	AT5G17790.1	15340011
AT4G19170.1	CDX88588	AT5G56760.1	21798944
AT4G19170.1	CDY11904	AT5G56760.1	21798944
AT4G19170.1	CDY32760	AT5G56760.1	21798944
AT4G19170.1	CDY32882	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78923	Canola	plastid	98.31	97.82
AT4G19170.1	Thale cress	plastid	88.2	87.9
CDX76489	Canola	plastid	78.08	87.03
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	26.81	66.25
VIT_02s0087g00910.t01	Wine grape	plastid	66.44	65.78
PGSC0003DMT400004981	Potato	plastid	65.09	65.31
Solyc08g075490.2.1	Tomato	plastid	65.26	65.15
KRH76475	Soybean	plastid	64.76	65.08
Solyc08g075480.2.1	Tomato	plastid	60.03	61.7
PGSC0003DMT400004975	Potato	plastid	33.39	57.89
Os02t0704000-01	Rice	plastid	58.35	54.23
KXG30924	Sorghum	plastid	58.01	54.0
TraesCS6A01G271600.1	Wheat	plastid	58.18	53.99
TraesCS6D01G251800.1	Wheat	plastid	58.01	53.83
HORVU6Hr1G068720.1	Barley	plastid	58.35	53.81
TraesCS6B01G298800.1	Wheat	plastid	58.18	53.65
Zm00001d051556_P001	Maize	plastid	57.67	53.6
Zm00001d017766_P001	Maize	plastid	57.0	52.9
Os12t0435200-01	Rice	plastid	48.06	49.48
GSMUA_Achr4P19020_001	Banana	plastid	40.47	45.63
CDX82482	Canola	cytosol	27.82	41.67
CDY57471	Canola	cytosol	27.49	41.16
CDY53711	Canola	cytosol	33.39	37.71
CDY39117	Canola	mitochondrion	34.91	37.43
CDX93902	Canola	cytosol	32.88	37.14
CDX98456	Canola	cytosol	15.51	36.08
CDY33218	Canola	plastid	36.09	35.79
CDY61838	Canola	plastid	35.41	35.65
CDY26294	Canola	plastid	35.41	35.65
CDX77467	Canola	plastid	34.57	35.04
CDY34748	Canola	endoplasmic reticulum, extracellular	28.5	34.99
CDX85148	Canola	cytosol	34.06	34.53
CDX97576	Canola	plastid	34.57	34.34
CDX98455	Canola	plastid	34.57	34.34
CDX78842	Canola	plastid	32.72	33.39
CDY01534	Canola	cytosol, plastid	32.55	33.1
CDY55629	Canola	cytosol, plastid	32.55	33.1
CDY52448	Canola	plastid	33.39	32.89
CDX88443	Canola	plastid	33.22	32.72
CDX99475	Canola	plastid	32.04	32.7
CDX98457	Canola	plastid	17.37	32.7
CDY34746	Canola	cytosol	6.91	32.03
CDX76782	Canola	mitochondrion	32.21	31.21
CDX76783	Canola	plastid	31.53	30.61
CDY34747	Canola	cytosol	6.41	28.15

Protein Annotations

EnsemblPlants:CDX99397	EnsemblPlantsGene:GSBRNA2T00107720001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	PFAM:PF03055
ProteinID:CDX99397	ProteinID:CDX99397.1	SEG:seg	UniParc:UPI0004EB4D44	MapMan:9.1.6.3.2	:

Description

BnaC01g11550D

Coordinates

chrLK031910:-:375723..377789

Molecular Weight (calculated)

65437.2 Da

IEP (calculated)

6.927

GRAVY (calculated)

-0.234

Length

593 amino acids

Sequence
(BLAST)

001: MDSLSSSSFI STFSPASSLL LPRPSSSRRL LRINSAVVEE RSPITNPSQN NDLPPSKPKK LYTRTNHTAV SSPAKPRQQT SLATALFTTM EEVINTFIDP
101: PSRPSVDPKH VLSDNFAPVL DELPPTECEI IHGSLPPSLN GAYIRNGPNP QFLPRGPYHL FDGDGMLHAI RIRDGKATLC SRYVKTYKYN VEKQTGTPVI
201: PNVFSGFNGV PASMARGALT AFRVLAGQFN PINGIGLANT SLAFFCNRLF ALGESDLPYA VRLTESGDIV TIGRHDFDGK LAMSMTAHPK TDPETGETFA
301: FRYGPVPPFL TFFRFDSTGK KRKDVPVFSM TSPSFLHDFA ITRRHAIFSE IQIRMRMDSM LEGGSPVGAD NGKTPRLGVI PRYAEDESEM KWFEVPGFNI
401: IHAINAWDED DGNTIVLIAP NIMSIEHTLE RMELVHALVE KVKIDLVTGI VTRHPISARN LDFAVINPAF VGRQSRYVYA AIGDPMPKIS GVVKLDVTRG
501: DRDDCTVARR MYGPGCYGGE PFFVARDPGN PEAEEDDGYV VTYVHDEVAG ESKFLVMDAK SPELEVVAAV RLPRRVPYGF HGLFVKESDL NKL

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.