CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013298.1-P	Field mustard	plastid	98.45	98.45
CDX99475	Canola	plastid	96.39	96.39
CDY55629	Canola	cytosol, plastid	89.67	89.37
CDY01534	Canola	cytosol, plastid	89.16	88.85
AT4G18350.1	Thale cress	cytosol, plastid	86.06	85.76
Zm00001d027690_P001	Maize	cytosol	9.81	74.03
Zm00001d023690_P001	Maize	cytosol	16.52	73.28
Zm00001d008638_P001	Maize	cytosol	10.33	73.17
CDX82482	Canola	cytosol	49.4	72.47
CDY57471	Canola	cytosol	48.54	71.21
CDX98456	Canola	cytosol	30.12	68.63
CDY39117	Canola	mitochondrion	64.54	67.81
CDY26294	Canola	plastid	65.4	64.52
Os12t0617400-01	Rice	cytosol	31.33	64.31
CDY61838	Canola	plastid	65.06	64.18
PGSC0003DMT400039054	Potato	plastid	62.82	62.93
CDY33218	Canola	plastid	64.37	62.54
Solyc08g016720.1.1	Tomato	plastid	62.48	62.48
CDX97576	Canola	plastid	63.51	61.81
CDX98455	Canola	plastid	63.51	61.81
VIT_10s0003g03750.t01	Wine grape	plastid	63.17	60.66
KRH58642	Soybean	plastid	61.1	60.37
CDY52448	Canola	plastid	62.48	60.3
CDX88443	Canola	plastid	62.48	60.3
Zm00001d031086_P001	Maize	plastid	59.04	60.28
GSMUA_Achr4P22870_001	Banana	plastid	61.45	59.4
KRH42549	Soybean	plastid	60.07	59.25
TraesCS5A01G374000.1	Wheat	plastid	60.07	59.05
TraesCS5D01G383500.1	Wheat	plastid	60.41	58.99
GSMUA_Achr2P12950_001	Banana	plastid	59.38	58.57
TraesCS5B01G375900.1	Wheat	plastid	59.9	58.49
Zm00001d033222_P001	Maize	extracellular	60.76	58.44
Os03t0645900-00	Rice	plastid	60.76	58.06
GSMUA_Achr6P31180_001	Banana	plastid	60.24	58.04
HORVU5Hr1G008050.1	Barley	plastid	60.59	57.99
GSMUA_Achr7P01250_001	Banana	plastid	59.9	57.71
EER93751	Sorghum	plastid	60.59	57.61
Zm00001d013689_P001	Maize	plastid	59.55	57.57
GSMUA_Achr4P31460_001	Banana	plastid	59.55	57.38
TraesCS5B01G029300.1	Wheat	plastid	60.59	57.33
GSMUA_Achr5P02570_001	Banana	plastid	60.07	57.21
Zm00001d041319_P001	Maize	plastid	59.38	57.12
TraesCS5D01G038800.1	Wheat	plastid	60.24	56.91
Zm00001d018819_P001	Maize	plastid	56.11	56.89
OQU88453	Sorghum	plastid	55.94	56.72
HORVU5Hr1G054970.1	Barley	cytosol	59.21	56.58
Zm00001d007876_P001	Maize	plastid	55.59	56.17
Os07t0154100-01	Rice	plastid	55.77	55.67
CDX98457	Canola	plastid	29.95	55.24
TraesCS2D01G251600.1	Wheat	plastid	55.08	54.98
Zm00001d000095_P001	Maize	cytosol	15.49	54.88
HORVU5Hr1G092850.2	Barley	plastid	60.24	54.35
TraesCS2B01G268400.1	Wheat	plastid	55.59	54.19
HORVU5Hr1G044510.1	Barley	cytosol	55.77	54.0
TraesCS2A01G250600.1	Wheat	plastid	53.53	52.45
CDX77467	Canola	plastid	51.29	50.94
CDX85148	Canola	cytosol	50.95	50.6
Zm00001d000157_P001	Maize	cytosol	8.78	48.57
Zm00001d023458_P001	Maize	cytosol	11.19	46.1
Zm00001d042076_P001	Maize	cytosol, plastid	31.67	43.81
Zm00001d022623_P001	Maize	cytosol	25.47	39.68
Zm00001d035724_P001	Maize	plastid	39.76	36.38
CDY53711	Canola	cytosol	30.64	33.9
CDX76489	Canola	plastid	30.98	33.83
CDX93902	Canola	cytosol	30.12	33.33
Zm00001d019813_P001	Maize	plastid	10.84	33.33
CDX99397	Canola	plastid	33.39	32.72
CDX78923	Canola	plastid	33.39	32.55
CDY34748	Canola	endoplasmic reticulum, extracellular	26.85	32.3
CDY34746	Canola	cytosol	6.54	29.69
CDY34747	Canola	cytosol	6.71	28.89
CDX76782	Canola	mitochondrion	30.29	28.76
Zm00001d009286_P001	Maize	plastid	12.05	27.78
CDX76783	Canola	plastid	28.92	27.5
Zm00001d033377_P001	Maize	plastid	12.22	25.0
Zm00001d027592_P001	Maize	mitochondrion	17.73	24.18

Protein Annotations

EnsemblPlants:CDX78842	EnsemblPlantsGene:GSBRNA2T00131317001	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	ncoils:Coil	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42
PFAM:PF03055	ProteinID:CDX78842	ProteinID:CDX78842.1	SEG:seg	UniParc:UPI0004EF205F	MapMan:11.1.1.4

Description

BnaA01g09090D

Coordinates

chrLK031816:+:403521..405266

Molecular Weight (calculated)

64526.1 Da

IEP (calculated)

5.207

GRAVY (calculated)

-0.224

Length

581 amino acids

Sequence
(BLAST)

001: MVSLLTMSTS AAITYPQAQS DLCMRPIKRQ PKIKCTVHID VTDQPLKRSS FTPRTTATPP PQYNSLRLNI FQKAAASAID AAERALISHE KDTPRSKTAD
101: PSVQIAGNYF PVSECPVRQF LTVEGTIPDS IDGVYVRNGA NPMFDPIAGH HLFDGDGMVH AIKITNGSAS YACRFTKTER LIQEKRLGRP VFPKAIGELH
201: GHSGIARLML FYARGLCGLV NNQNGVGVAN AGLVYFNNRL LAMSEDDLPY QLKITQTGDL ETVGRYDFDG QLKSTMIAHP KLDPVTKELH ALSYDVVRKP
301: YLKYFRFSPD GVKSPEVEIP LETPTMIHDF SITENFVVIP DQQVVFKLGE MMAGNSPVVF DGGKVSRLGI MPKDATEASE IIWVDSPETF CFHLWNAWES
401: PETEEVVVIG SCMSPADSIF NERDESLKSV LTEIRINLRT RESTRRAMLV DELNLEIGMV NRNRLGRETR FAFLAIADPW PKVSGFAKVD LVTGEIEKYV
501: YGDGKYGGEP FFLPSGSVDG GDNEDDGYIF CHVHDEEKET SELQIIDAVD LKLEATIKLP CRVPYGFHGT FVDASELVDQ V

Best Arabidopsis Sequence Match ( AT4G18350.1 )
(BLAST)

001: MVSLLTMPMS GGIKTWPQAQ IDLGFRPIKR QPKVIKCTVQ IDVTELTKKR QLFTPRTTAT PPQHNPLRLN IFQKAAAIAI DAAERALISH EQDSPLPKTA
101: DPRVQIAGNY SPVPESSVRR NLTVEGTIPD CIDGVYIRNG ANPMFEPTAG HHLFDGDGMV HAVKITNGSA SYACRFTKTE RLVQEKRLGR PVFPKAIGEL
201: HGHSGIARLM LFYARGLCGL INNQNGVGVA NAGLVYFNNR LLAMSEDDLP YQLKITQTGD LQTVGRYDFD GQLKSAMIAH PKLDPVTKEL HALSYDVVKK
301: PYLKYFRFSP DGVKSPELEI PLETPTMIHD FAITENFVVI PDQQVVFKLG EMISGKSPVV FDGEKVSRLG IMPKDATEAS QIIWVNSPET FCFHLWNAWE
401: SPETEEIVVI GSCMSPADSI FNERDESLRS VLSEIRINLR TRKTTRRSLL VNEDVNLEIG MVNRNRLGRK TRFAFLAIAY PWPKVSGFAK VDLCTGEMKK
501: YIYGGEKYGG EPFFLPGNSG NGEENEDDGY IFCHVHDEET KTSELQIINA VNLKLEATIK LPSRVPYGFH GTFVDSNELV DQL

Arabidopsis Description

NCED29-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49505]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.