Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012529_P001 | |
| Zm00001d043095_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30100.1 | Zm00001d012529_P001 | AT5G17790.1 | 15340011 |
| AT1G30100.1 | Zm00001d043095_P004 | AT5G17790.1 | 15340011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009286_P001 | Maize | plastid | 88.38 | 99.6 |
| Zm00001d019813_P001 | Maize | plastid | 57.75 | 86.77 |
| Zm00001d000157_P001 | Maize | cytosol | 17.96 | 48.57 |
| Zm00001d000095_P001 | Maize | cytosol | 18.31 | 31.71 |
| KRH45171 | Soybean | plastid | 17.96 | 30.91 |
| CDX98457 | Canola | plastid | 24.65 | 22.22 |
| Zm00001d013689_P001 | Maize | plastid | 41.2 | 19.47 |
| Zm00001d033222_P001 | Maize | extracellular | 40.14 | 18.87 |
| Zm00001d041319_P001 | Maize | plastid | 33.1 | 15.56 |
| Zm00001d018819_P001 | Maize | plastid | 30.99 | 15.36 |
| Zm00001d031086_P001 | Maize | plastid | 29.58 | 14.76 |
| Zm00001d007876_P001 | Maize | plastid | 29.58 | 14.61 |
| GSMUA_Achr4P31460_001 | Banana | plastid | 30.63 | 14.43 |
| GSMUA_Achr5P02570_001 | Banana | plastid | 30.63 | 14.26 |
| GSMUA_Achr4P22870_001 | Banana | plastid | 29.58 | 13.98 |
| GSMUA_Achr7P01250_001 | Banana | plastid | 29.23 | 13.76 |
| Bra021558.1-P | Field mustard | plastid | 28.52 | 13.55 |
| CDY33218 | Canola | plastid | 28.52 | 13.55 |
| GSMUA_Achr6P31180_001 | Banana | plastid | 28.52 | 13.43 |
| CDY39117 | Canola | mitochondrion | 26.06 | 13.38 |
| AT3G14440.1 | Thale cress | plastid | 27.82 | 13.19 |
| CDX98455 | Canola | plastid | 27.46 | 13.07 |
| VIT_10s0003g03750.t01 | Wine grape | plastid | 27.82 | 13.06 |
| Bra027336.1-P | Field mustard | plastid | 27.11 | 12.9 |
| CDX97576 | Canola | plastid | 27.11 | 12.9 |
| GSMUA_Achr2P12950_001 | Banana | plastid | 26.41 | 12.73 |
| Bra013298.1-P | Field mustard | plastid | 25.0 | 12.22 |
| CDX78842 | Canola | plastid | 25.0 | 12.22 |
| AT4G18350.1 | Thale cress | cytosol, plastid | 25.0 | 12.18 |
| VIT_19s0093g00550.t01 | Wine grape | plastid | 26.06 | 12.15 |
| CDY61838 | Canola | plastid | 25.0 | 12.05 |
| CDX99475 | Canola | plastid | 24.65 | 12.05 |
| CDY55629 | Canola | cytosol, plastid | 24.65 | 12.01 |
| CDY01534 | Canola | cytosol, plastid | 24.65 | 12.01 |
| Bra032359.1-P | Field mustard | plastid | 24.65 | 11.9 |
| Solyc07g056570.1.1 | Tomato | plastid | 25.35 | 11.9 |
| AT1G30100.1 | Thale cress | plastid | 24.65 | 11.88 |
| CDY26294 | Canola | plastid | 24.65 | 11.88 |
| PGSC0003DMT400039054 | Potato | plastid | 23.94 | 11.72 |
| Solyc08g016720.1.1 | Tomato | plastid | 23.59 | 11.53 |
| Zm00001d035724_P001 | Maize | plastid | 25.7 | 11.5 |
| CDY52448 | Canola | plastid | 24.3 | 11.46 |
| CDX88443 | Canola | plastid | 24.3 | 11.46 |
| Bra008358.1-P | Field mustard | plastid | 23.59 | 11.41 |
| Bra035033.1-P | Field mustard | plastid | 23.94 | 11.3 |
| PGSC0003DMT400071048 | Potato | cytosol, mitochondrion | 20.07 | 11.26 |
| Zm00001d034075_P001 | Maize | cytosol | 1.41 | 11.11 |
| AT1G78390.1 | Thale cress | cytosol, plastid | 25.7 | 11.11 |
| Zm00001d027690_P001 | Maize | cytosol | 2.46 | 9.09 |
| Zm00001d048373_P002 | Maize | cytosol, plasma membrane | 17.25 | 8.91 |
| Zm00001d051556_P001 | Maize | plastid | 19.72 | 8.78 |
| Zm00001d017766_P001 | Maize | plastid | 19.37 | 8.61 |
| Zm00001d008638_P001 | Maize | cytosol | 2.46 | 8.54 |
| Zm00001d027592_P001 | Maize | mitochondrion | 9.51 | 6.34 |
| Zm00001d020069_P002 | Maize | plastid | 11.97 | 6.08 |
| Zm00001d023458_P001 | Maize | cytosol | 2.82 | 5.67 |
| Bra012603.1-P | Field mustard | cytosol | 8.45 | 5.43 |
| Zm00001d023690_P001 | Maize | cytosol | 2.46 | 5.34 |
| Zm00001d045232_P001 | Maize | plastid | 10.21 | 4.73 |
| Zm00001d042076_P001 | Maize | cytosol, plastid | 6.34 | 4.29 |
| CDX82482 | Canola | cytosol | 4.23 | 3.03 |
| Bra001552.1-P | Field mustard | cytosol | 4.23 | 3.03 |
| CDY57471 | Canola | cytosol | 3.87 | 2.78 |
| CDX98456 | Canola | cytosol | 2.11 | 2.35 |
| Zm00001d022623_P001 | Maize | cytosol | 2.11 | 1.61 |
Protein Annotations
| EntrezGene:100383768 | MapMan:35.1 | EMBL:BT068246 | UniProt:C0PIX7 | InterPro:Carotenoid_Oase | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 |
| GO:GO:0051213 | GO:GO:0055114 | ProteinID:ONM07502.1 | PFAM:PF03055 | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF49 |
| SignalP:SignalP-noTM | UniParc:UPI000195CFAD | EnsemblPlantsGene:Zm00001d033377 | EnsemblPlants:Zm00001d033377_P001 | EnsemblPlants:Zm00001d033377_T001 | SEG:seg |
Description
9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic
Coordinates
chr1:-:261041495..261042349
Molecular Weight (calculated)
29391.0 Da
IEP (calculated)
11.346
GRAVY (calculated)
-0.263
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMAASVLLA APAPLLAASH PRPTGEPAAS RTVPASARFS SPGLLCSPRF LRRPGNNPLD PAETPHAIHA NSATADVGSR PAHLYLHTPA PVGRVQARAS
101: NSVRFSLHAA ECLQASFHAD LPAPSKKPTT IAVPRHAAAP RKSGGGGKKQ LNLFQRAAAT AIDAFEEGFV ANVIERPHGQ PSTADPAVQI AGNFAPIGER
201: PPVRGLPVSG RIPPSISGIY ARNGANPCFD PVAGHHLFDG SASKLQPATL ELCSVAPLGP QPRQRSRPHR SPPPSPPAVQ QAAA
101: NSVRFSLHAA ECLQASFHAD LPAPSKKPTT IAVPRHAAAP RKSGGGGKKQ LNLFQRAAAT AIDAFEEGFV ANVIERPHGQ PSTADPAVQI AGNFAPIGER
201: PPVRGLPVSG RIPPSISGIY ARNGANPCFD PVAGHHLFDG SASKLQPATL ELCSVAPLGP QPRQRSRPHR SPPPSPPAVQ QAAA
001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV
Arabidopsis Description
NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.