Factsheet for Zm00001d023458_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98456	Canola	cytosol	45.39	25.1
Zm00001d027592_P001	Maize	mitochondrion	71.63	23.71
Zm00001d022623_P001	Maize	cytosol	46.1	17.43
Zm00001d031086_P001	Maize	plastid	65.96	16.34
Zm00001d042076_P001	Maize	cytosol, plastid	46.1	15.48
Zm00001d041319_P001	Maize	plastid	64.54	15.07
Zm00001d013689_P001	Maize	plastid	61.7	14.48
Bra012603.1-P	Field mustard	cytosol	44.68	14.25
Zm00001d033222_P001	Maize	extracellular	58.87	13.74
Os03t0645900-00	Rice	plastid	58.16	13.49
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	48.23	13.44
CDY39117	Canola	mitochondrion	51.77	13.2
Bra032359.1-P	Field mustard	plastid	53.19	12.76
Zm00001d018819_P001	Maize	plastid	51.77	12.74
AT1G30100.1	Thale cress	plastid	53.19	12.73
CDY61838	Canola	plastid	52.48	12.56
CDY26294	Canola	plastid	52.48	12.56
Zm00001d007876_P001	Maize	plastid	50.35	12.35
VIT_19s0093g00550.t01	Wine grape	plastid	51.77	11.99
VIT_10s0003g03750.t01	Wine grape	plastid	51.06	11.9
Solyc08g016720.1.1	Tomato	plastid	48.94	11.88
CDY33218	Canola	plastid	50.35	11.87
Bra021558.1-P	Field mustard	plastid	50.35	11.87
Bra001552.1-P	Field mustard	cytosol	33.33	11.87
CDX82482	Canola	cytosol	33.33	11.87
Bra027336.1-P	Field mustard	plastid	49.65	11.73
CDX97576	Canola	plastid	49.65	11.73
PGSC0003DMT400039054	Potato	plastid	48.23	11.72
CDY01534	Canola	cytosol, plastid	48.23	11.66
CDY55629	Canola	cytosol, plastid	48.23	11.66
CDY52448	Canola	plastid	49.65	11.63
Bra035033.1-P	Field mustard	plastid	49.65	11.63
CDY57471	Canola	cytosol	32.62	11.62
CDX98455	Canola	plastid	48.94	11.56
GSMUA_Achr2P12950_001	Banana	plastid	48.23	11.54
AT3G14440.1	Thale cress	plastid	48.94	11.52
GSMUA_Achr4P22870_001	Banana	plastid	48.94	11.48
GSMUA_Achr5P02570_001	Banana	plastid	49.65	11.48
CDX88443	Canola	plastid	48.23	11.3
GSMUA_Achr6P31180_001	Banana	plastid	48.23	11.28
Bra008358.1-P	Field mustard	plastid	46.81	11.24
Bra013298.1-P	Field mustard	plastid	46.1	11.19
CDX78842	Canola	plastid	46.1	11.19
CDX99475	Canola	plastid	46.1	11.19
GSMUA_Achr7P01250_001	Banana	plastid	47.52	11.11
Solyc07g056570.1.1	Tomato	plastid	47.52	11.07
AT4G18350.1	Thale cress	cytosol, plastid	45.39	10.98
AT1G78390.1	Thale cress	cytosol, plastid	50.35	10.81
GSMUA_Achr4P31460_001	Banana	plastid	46.1	10.78
Zm00001d051556_P001	Maize	plastid	28.37	6.27
Zm00001d048373_P002	Maize	cytosol, plasma membrane	24.11	6.18
Zm00001d017766_P001	Maize	plastid	27.66	6.1
Zm00001d020069_P002	Maize	plastid	22.7	5.72
Zm00001d045232_P001	Maize	plastid	21.28	4.89
Zm00001d000157_P001	Maize	cytosol	3.55	4.76
Zm00001d035724_P001	Maize	plastid	17.73	3.94
Zm00001d019813_P001	Maize	plastid	4.96	3.7
KRH45171	Soybean	plastid	4.26	3.64
Zm00001d009286_P001	Maize	plastid	5.67	3.17
Zm00001d000095_P001	Maize	cytosol	3.55	3.05
Zm00001d033377_P001	Maize	plastid	5.67	2.82
Zm00001d034075_P001	Maize	cytosol	0.71	2.78
CDX98457	Canola	plastid	4.26	1.9
Zm00001d023690_P001	Maize	cytosol	0.71	0.76
Zm00001d027690_P001	Maize	cytosol	0.0	0.0
Zm00001d008638_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d023458_P001	EnsemblPlants:Zm00001d023458_T001	EnsemblPlantsGene:Zm00001d023458	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	ProteinID:AQK39340.1	UniParc:UPI000843EBAB
UniProt:A0A1D6ITE2	MapMan:35.1	:	:	:	:

Description

9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic

Coordinates

chr10:-:6279773..6280198

Molecular Weight (calculated)

15578.4 Da

IEP (calculated)

7.388

GRAVY (calculated)

-0.167

Length

141 amino acids

Sequence
(BLAST)

001: MAWVDVPDCF CFHLWNVWED AGTGEVVVVG SCMTRADSIF NDADDGRQLQ SVLTEIRLDT RTGALTRRAV LPTSAQVNLE VNRNMLGRRT RYAYLAVAEP
101: WPKVSGFVKV DLGATTLARQ SGHVAWSGSH APTQSAWNRC P

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.