Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012529_P001 | |
| Zm00001d043095_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30100.1 | Zm00001d012529_P001 | AT5G17790.1 | 15340011 |
| AT1G30100.1 | Zm00001d043095_P004 | AT5G17790.1 | 15340011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d000157_P001 | Maize | cytosol | 56.71 | 88.57 |
| CDX98457 | Canola | plastid | 56.1 | 29.21 |
| KRH45171 | Soybean | plastid | 28.05 | 27.88 |
| Zm00001d019813_P001 | Maize | plastid | 31.1 | 26.98 |
| Zm00001d031086_P001 | Maize | plastid | 81.71 | 23.55 |
| Zm00001d041319_P001 | Maize | plastid | 79.88 | 21.69 |
| Zm00001d009286_P001 | Maize | plastid | 31.71 | 20.63 |
| Zm00001d033222_P001 | Maize | extracellular | 74.39 | 20.2 |
| Zm00001d013689_P001 | Maize | plastid | 73.78 | 20.13 |
| PGSC0003DMT400071048 | Potato | cytosol, mitochondrion | 57.93 | 18.77 |
| Zm00001d033377_P001 | Maize | plastid | 31.71 | 18.31 |
| Zm00001d018819_P001 | Maize | plastid | 63.41 | 18.15 |
| GSMUA_Achr4P22870_001 | Banana | plastid | 66.46 | 18.14 |
| Zm00001d007876_P001 | Maize | plastid | 63.41 | 18.09 |
| GSMUA_Achr4P31460_001 | Banana | plastid | 65.24 | 17.74 |
| GSMUA_Achr2P12950_001 | Banana | plastid | 62.2 | 17.32 |
| PGSC0003DMT400039054 | Potato | plastid | 60.98 | 17.24 |
| CDY39117 | Canola | mitochondrion | 57.93 | 17.18 |
| GSMUA_Achr5P02570_001 | Banana | plastid | 63.41 | 17.05 |
| Solyc08g016720.1.1 | Tomato | plastid | 60.37 | 17.04 |
| VIT_10s0003g03750.t01 | Wine grape | plastid | 62.2 | 16.86 |
| GSMUA_Achr6P31180_001 | Banana | plastid | 61.59 | 16.75 |
| GSMUA_Achr7P01250_001 | Banana | plastid | 60.98 | 16.58 |
| VIT_19s0093g00550.t01 | Wine grape | plastid | 60.98 | 16.42 |
| AT4G18350.1 | Thale cress | cytosol, plastid | 57.93 | 16.3 |
| Solyc07g056570.1.1 | Tomato | plastid | 59.76 | 16.2 |
| Bra032359.1-P | Field mustard | plastid | 57.93 | 16.16 |
| CDY26294 | Canola | plastid | 57.93 | 16.13 |
| CDY61838 | Canola | plastid | 57.93 | 16.13 |
| CDX98455 | Canola | plastid | 58.54 | 16.08 |
| CDX97576 | Canola | plastid | 58.54 | 16.08 |
| CDY33218 | Canola | plastid | 58.54 | 16.05 |
| Bra021558.1-P | Field mustard | plastid | 58.54 | 16.05 |
| AT1G30100.1 | Thale cress | plastid | 57.32 | 15.96 |
| CDY55629 | Canola | cytosol, plastid | 56.71 | 15.95 |
| CDY01534 | Canola | cytosol, plastid | 56.71 | 15.95 |
| Bra027336.1-P | Field mustard | plastid | 57.93 | 15.91 |
| Zm00001d035724_P001 | Maize | plastid | 61.59 | 15.91 |
| CDX88443 | Canola | plastid | 57.93 | 15.78 |
| AT3G14440.1 | Thale cress | plastid | 57.32 | 15.69 |
| CDX99475 | Canola | plastid | 55.49 | 15.66 |
| Bra013298.1-P | Field mustard | plastid | 55.49 | 15.66 |
| Bra008358.1-P | Field mustard | plastid | 55.49 | 15.5 |
| CDX78842 | Canola | plastid | 54.88 | 15.49 |
| CDY52448 | Canola | plastid | 56.1 | 15.28 |
| Bra035033.1-P | Field mustard | plastid | 55.49 | 15.12 |
| Bra012603.1-P | Field mustard | cytosol | 40.24 | 14.93 |
| AT1G78390.1 | Thale cress | cytosol, plastid | 57.93 | 14.46 |
| CDY57471 | Canola | cytosol | 31.1 | 12.88 |
| Bra001552.1-P | Field mustard | cytosol | 30.49 | 12.63 |
| CDX82482 | Canola | cytosol | 30.49 | 12.63 |
| Zm00001d027690_P001 | Maize | cytosol | 4.88 | 10.39 |
| Zm00001d008638_P001 | Maize | cytosol | 4.88 | 9.76 |
| Zm00001d048373_P002 | Maize | cytosol, plasma membrane | 31.71 | 9.45 |
| Zm00001d017766_P001 | Maize | plastid | 35.37 | 9.08 |
| Zm00001d051556_P001 | Maize | plastid | 34.76 | 8.93 |
| Zm00001d020069_P002 | Maize | plastid | 25.0 | 7.33 |
| Zm00001d023690_P001 | Maize | cytosol | 4.88 | 6.11 |
| Zm00001d045232_P001 | Maize | plastid | 20.73 | 5.55 |
| Zm00001d027592_P001 | Maize | mitochondrion | 10.37 | 3.99 |
| Zm00001d023458_P001 | Maize | cytosol | 3.05 | 3.55 |
| Zm00001d042076_P001 | Maize | cytosol, plastid | 8.54 | 3.33 |
| CDX98456 | Canola | cytosol | 1.22 | 0.78 |
| Zm00001d022623_P001 | Maize | cytosol | 1.22 | 0.54 |
| Zm00001d034075_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d000095_P001 | EnsemblPlants:Zm00001d000095_T001 | EnsemblPlantsGene:Zm00001d000095 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 | InterPro:Carotenoid_Oase |
| PANTHER:PTHR10543 | PANTHER:PTHR10543:SF49 | PFAM:PF03055 | UniParc:UPI0008450968 | UniProt:A0A1X7YEQ7 | MapMan:35.1 |
Description
9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic
Coordinates
chrB73V4_ctg31:+:775860..776420
Molecular Weight (calculated)
17617.3 Da
IEP (calculated)
10.503
GRAVY (calculated)
0.004
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQVGRDRGL LERPRALPRS ADPAVQIAGN FAPVGEQAPV RSLPVSGRIP PFISGVYARN RVNPSFEPSA GHHLFDGDGT VRAVRIRNGA AESYACRFTE
101: TAKLRIACLA LFYARELCGL VDPSRGTGVA NAGLVYFNGR LLAMSEQALI AAVGSPLLQF WVKK
101: TAKLRIACLA LFYARELCGL VDPSRGTGVA NAGLVYFNGR LLAMSEQALI AAVGSPLLQF WVKK
001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV
Arabidopsis Description
NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.