Factsheet for Bra008358.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035033.1-P	Field mustard	plastid	85.01	82.89
AT1G78390.1	Thale cress	cytosol, plastid	83.65	74.73
Bra001552.1-P	Field mustard	cytosol	49.91	73.99
Zm00001d008638_P001	Maize	cytosol	9.71	69.51
Zm00001d023690_P001	Maize	cytosol	15.5	69.47
Zm00001d027690_P001	Maize	cytosol	9.03	68.83
Bra012603.1-P	Field mustard	cytosol	51.79	68.78
Bra021558.1-P	Field mustard	plastid	66.95	65.72
Bra027336.1-P	Field mustard	plastid	65.59	64.49
Os12t0617400-01	Rice	cytosol	31.01	64.31
Bra032359.1-P	Field mustard	plastid	64.22	64.12
Bra013298.1-P	Field mustard	plastid	61.16	61.79
Zm00001d031086_P001	Maize	plastid	59.11	60.98
TraesCS5A01G374000.1	Wheat	plastid	60.31	59.9
TraesCS5B01G375900.1	Wheat	plastid	60.65	59.83
TraesCS5D01G383500.1	Wheat	plastid	60.65	59.83
Zm00001d018819_P001	Maize	plastid	58.26	59.69
OQU88453	Sorghum	plastid	58.09	59.51
GSMUA_Achr4P22870_001	Banana	plastid	60.31	58.9
GSMUA_Achr5P02570_001	Banana	plastid	61.16	58.85
Os07t0154100-01	Rice	plastid	58.26	58.76
GSMUA_Achr2P12950_001	Banana	plastid	58.77	58.57
GSMUA_Achr6P31180_001	Banana	plastid	60.14	58.54
Zm00001d007876_P001	Maize	plastid	57.24	58.43
Os03t0645900-00	Rice	plastid	60.48	58.39
TraesCS2D01G251600.1	Wheat	plastid	57.58	58.08
GSMUA_Achr7P01250_001	Banana	plastid	59.63	58.04
Zm00001d041319_P001	Maize	plastid	59.45	57.78
TraesCS2B01G268400.1	Wheat	plastid	58.6	57.72
Zm00001d033222_P001	Maize	extracellular	59.28	57.62
EER93751	Sorghum	plastid	59.63	57.28
HORVU5Hr1G054970.1	Barley	cytosol	59.28	57.24
GSMUA_Achr4P31460_001	Banana	plastid	58.77	57.21
HORVU5Hr1G008050.1	Barley	plastid	58.77	56.84
TraesCS5B01G029300.1	Wheat	plastid	58.94	56.35
Zm00001d013689_P001	Maize	plastid	57.58	56.24
TraesCS5D01G038800.1	Wheat	plastid	58.77	56.1
TraesCS2A01G250600.1	Wheat	plastid	56.39	55.82
Zm00001d000095_P001	Maize	cytosol	15.5	55.49
HORVU5Hr1G092850.2	Barley	plastid	60.65	55.28
HORVU5Hr1G044510.1	Barley	cytosol	55.88	54.67
Bra015002.1-P	Field mustard	plastid	52.98	53.16
Zm00001d000157_P001	Maize	cytosol	9.37	52.38
Zm00001d023458_P001	Maize	cytosol	11.24	46.81
Zm00001d042076_P001	Maize	cytosol, plastid	32.54	45.48
Zm00001d022623_P001	Maize	cytosol	26.06	41.02
Zm00001d035724_P001	Maize	plastid	39.86	36.85
Bra013378.1-P	Field mustard	peroxisome	31.18	36.31
Bra040449.1-P	Field mustard	cytosol	31.35	33.64
Bra020970.1-P	Field mustard	plastid	31.86	32.98
Zm00001d019813_P001	Maize	plastid	10.39	32.28
Bra007826.1-P	Field mustard	plastid	31.69	31.05
Bra007825.1-P	Field mustard	plastid	27.94	28.52
Zm00001d009286_P001	Maize	plastid	11.24	26.19
Zm00001d027592_P001	Maize	mitochondrion	18.4	25.35
Zm00001d033377_P001	Maize	plastid	11.41	23.59

Protein Annotations

EnsemblPlants:Bra008358.1	EnsemblPlants:Bra008358.1-P	EnsemblPlantsGene:Bra008358	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	SEG:seg	UniParc:UPI00025464C6	UniProt:M4CVW1
MapMan:11.1.1.4	:	:	:	:	:

Description

AT1G78390 (E=3e-276) NCED9, ATNCED9 | NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA02:-:15013461..15015224

Molecular Weight (calculated)

65280.1 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.225

Length

587 amino acids

Sequence
(BLAST)

001: MASTSSASRP HLKSLSFSSS STLRNKKPTP CSVSYPVNKT FPISSSLQPP ATYKPISWKK LCKDVASLIP NTTNQAQRTA ATILNAVENA MVSYERRHHP
101: LPKTAAPAVQ IAGNFFPVPE QPVQHNLPVT GTLPECIQGV YVRNGANPLH KPISGHHLFD GDGMVHAVRF NNGSVSYSCR FTETNRLVQE RELGRSIFPK
201: AIGELHGHLG IAKLMLFNAR GLSGLIDTTR GLGVANTGLI YFNGYLLAMS EDDLPYHVII TQTGDLRTSG RYDFNGQLKT TMIAHPKLDP ETGELFALSY
301: DVVSKPYLKY FRFTSNGEKS PDVEIPLDEP TMIHDFAITE NFVVIPDQQV VFRLAEMVRG VSPVVYDKEK RSRFGVLNKY DKDASLILWI EVPDCFCFHL
401: WNAWEEPDTD EVVVVGSCMT PPDSVFKEHD ETLQSVLSEI RLNLKTGEST RRPVIISEEL NLEAGMVNRN LLGRKTRFAY LAITEPWPKV SGFAKVDLST
501: GDVQKYVYGD GKYGGEPLFL PEVSGYGEDC GYIMVFVHDE EKVKSELQII NAVSMKLEAT VTLPSRVPYG FHGTFMSNDD LMKQALC

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.