Factsheet for Bra020970.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002106.1-P
Bra002793.1-P
Bra006420.1-P
Bra006857.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	Bra002106.1-P	AT5G17790.1	15340011
AT4G19170.1	Bra006420.1-P	AT5G17790.1	15340011
AT4G19170.1	Bra002793.1-P	AT5G56760.1	21798944
AT4G19170.1	Bra006857.1-P	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76489	Canola	plastid	87.13	92.86
Bra013378.1-P	Field mustard	peroxisome	76.54	86.11
AT4G19170.1	Thale cress	plastid	87.3	83.19
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	27.34	64.58
VIT_02s0087g00910.t01	Wine grape	plastid	65.78	62.27
KRH76475	Soybean	plastid	63.49	61.02
PGSC0003DMT400004981	Potato	plastid	62.79	60.24
Solyc08g075490.2.1	Tomato	plastid	62.96	60.1
Solyc08g075480.2.1	Tomato	plastid	59.08	58.06
PGSC0003DMT400004975	Potato	plastid	32.63	54.09
Os02t0704000-01	Rice	plastid	57.32	50.94
KXG30924	Sorghum	plastid	56.97	50.71
TraesCS6A01G271600.1	Wheat	plastid	56.97	50.55
TraesCS6D01G251800.1	Wheat	plastid	56.79	50.39
HORVU6Hr1G068720.1	Barley	plastid	57.14	50.39
Zm00001d051556_P001	Maize	plastid	56.61	50.31
TraesCS6B01G298800.1	Wheat	plastid	56.97	50.23
Zm00001d017766_P001	Maize	plastid	56.08	49.77
Os12t0435200-01	Rice	plastid	47.44	46.7
GSMUA_Achr4P19020_001	Banana	plastid	38.27	41.25
Bra001552.1-P	Field mustard	cytosol	27.69	39.65
Bra012603.1-P	Field mustard	cytosol	28.75	36.88
Bra032359.1-P	Field mustard	plastid	35.98	34.69
Bra021558.1-P	Field mustard	plastid	35.45	33.61
Bra015002.1-P	Field mustard	plastid	34.04	32.99
Bra027336.1-P	Field mustard	plastid	34.22	32.5
Bra040449.1-P	Field mustard	cytosol	31.22	32.36
Bra013298.1-P	Field mustard	plastid	32.98	32.19
Bra008358.1-P	Field mustard	plastid	32.98	31.86
Bra035033.1-P	Field mustard	plastid	33.69	31.73
Bra007826.1-P	Field mustard	plastid	31.75	30.05
Bra007825.1-P	Field mustard	plastid	27.51	27.13

Protein Annotations

MapMan:50.1.12	EnsemblPlantsGene:Bra020970	EnsemblPlants:Bra020970.1	EnsemblPlants:Bra020970.1-P	InterPro:Carotenoid_Oase	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0010287	GO:GO:0016702
GO:GO:0046872	GO:GO:0055114	UniProt:M4DWS4	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46
UniParc:UPI0002545675	SEG:seg	:	:	:	:

Description

AT4G19170 (E=6e-145) NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)

Coordinates

chrA08:+:10875497..10877277

Molecular Weight (calculated)

62428.7 Da

IEP (calculated)

7.453

GRAVY (calculated)

-0.206

Length

567 amino acids

Sequence
(BLAST)

001: MYSVSSSSFI STFSPKPSLH LRHSSSSRLL PRINSTVVEE RAPIINPSEN NGPPHKKLYT RSNRNAVASP AKLRPETTLV TALFTTVEDV INTFIDPPSR
101: PSVDPKHVLS GNFAPVLDEL PPTECEIIHG SLPPSLDGAY IRNGPNPQFL PRGPYHLFDG DGMLHAIRIR NGKATLCSRF VKTYKYNVEK QNGAPVIPNV
201: FSGFNGVTAS VARGALTALR VLAGQYNPVN GIGLANTSLA FFCNRLFALG ESDLPYAVRL TNTGDIETIG RFDFGGKLEM SMTAHPKTDP QTGETFAFRY
301: SPVPPFLTFF RFDSTGKKQR DVPIVMRMNI MDLVLEGGSP VGADNRKTPR LGVIPRYAGD DSEMKWFEVP GFNIIHAINA WDENDGNAVV LIAPNIMSIE
401: HTLERMDLVH SLVEKVKIDL VTGIVTRHPI SARHLDFAVI NPAFLGRRSR YVYAAIGDPM PKISGVVKLD VSKGDRDDCT VARRMYGPGC YGGEPFFVAR
501: DPGDQEAEED DGYVVTYVHD EVAGESKFLV MDAKSPELEI VAAVRLPRRV PYGFHGLFVK ESDINKL

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.