Factsheet for Bra002106.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013378.1-P
Bra014290.1-P
Bra017974.1-P
Bra018081.1-P
Bra020970.1-P
Bra025315.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	Bra014290.1-P	AT1G51580.1	21798944
AT5G17790.1	Bra025315.1-P	AT3G27960.1	21798944
AT5G17790.1	Bra018081.1-P	AT3G48150.1	21798944
AT5G17790.1	Bra033769.1-P	AT3G48150.1	21798944
AT5G17790.1	Bra017974.1-P	AT3G49580.1	21798944
AT5G17790.1	Bra013378.1-P	AT4G19170.1	15340011
AT5G17790.1	Bra020970.1-P	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38459	Canola	plastid	95.67	95.67
Bra006420.1-P	Field mustard	plastid, vacuole	69.55	69.55
AT5G17790.1	Thale cress	plastid	58.1	54.88
KRH64967	Soybean	plastid	43.16	37.64
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	45.53	37.09
KRG94930	Soybean	mitochondrion, plastid, vacuole	42.74	36.73
PGSC0003DMT400028376	Potato	plastid	42.32	34.87
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	42.46	34.78
EES01648	Sorghum	plastid	41.34	32.93
Zm00001d012529_P001	Maize	plastid	40.22	31.89
Os01t0815700-01	Rice	plastid	41.9	31.58
Zm00001d043095_P004	Maize	mitochondrion	39.66	29.55
TraesCS3B01G370800.2	Wheat	plastid	41.2	26.89
TraesCS3D01G332700.1	Wheat	plastid	40.92	26.54
TraesCS3A01G339100.1	Wheat	nucleus	40.5	26.29
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	40.08	26.16
GSMUA_Achr7P21740_001	Banana	nucleus	39.8	25.36
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	24.86	24.76
Bra018736.1-P	Field mustard	plastid	13.13	22.54
Bra016196.1-P	Field mustard	mitochondrion, nucleus	12.57	19.4
Bra027952.1-P	Field mustard	nucleus	15.64	13.43

Protein Annotations

EnsemblPlants:Bra002106.1	EnsemblPlants:Bra002106.1-P	EnsemblPlantsGene:Bra002106	Gene3D:2.20.28.140	Gene3D:4.10.1060.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23111
PANTHER:PTHR23111:SF30	PFAM:PF00641	PFscan:PS50199	ScanProsite:PS01358	SEG:seg	SMART:SM00547
SUPFAM:SSF90209	UniParc:UPI0002543B42	UniProt:M4CD25	MapMan:16.12.5.3	:	:

Description

AT5G17790 (E=9e-253) VAR3 | VAR3 (VARIEGATED 3); binding / zinc ion binding

Coordinates

chrA10:+:11418038..11420605

Molecular Weight (calculated)

80989.7 Da

IEP (calculated)

8.579

GRAVY (calculated)

-0.769

Length

716 amino acids

Sequence
(BLAST)

001: MNNSTRILSL FSPPPPILRG LFISRLTNLR RLHRLASAPS FVNSSHRRSP LSFPPLIPTI PLSRFHTHRA RTSASDSVPS HHHQLPEWAE LIKSLSKAGY
101: FTDSGFENEF FPGLPEELIR QALACLALAR DRPELLEMVS RRDVQVVVEN VKPFLFRTGA DSLKRMRLYL TSGRQGIGKV LDVDKASTVD LMRLLLSYVV
201: DLSSSEGSKH HDREIMESSV RNLLSEIAKM SFCTPESNGA MQNKFSERNG GLFQKNVEKK QGDWICSRCS GLNFARNVKC FQCDEARPKR QLTGSEWECP
301: QCDFYNYGRN IACLRCDCKR PGDFSLNLAN SGSAYSKDPE LERRLVENEE KAQRWFSKLA QGGGSDANSV DTDEDFPEIM PLRKGVNRYV VNTRKTPLER
401: RLANTETDGT KTNRSLNEIL GSSSSSASSR RFESSQVVNS DFVPFVPLPS DMFAKKPDKE GTQKGQMDDV SDDNGILYKE DKSSGKETDE PEKDEKESDW
501: LKKVTELHKV SDPESSIPEE NSPEKMPMRK GENQYVVSRK KDRSLTSPAN KRRMSIETKD SDFVPFVPFP PDYFAKHKQP EETTTTTDTI PAPVTKNPSQ
601: VVQKEPSSSI PEPMAEKIRN GKSLEGSLVK EPDLLDMSEE AKAERWFKRV AEIKNISELS QIPDEDFPSI MPMRKGVNRF VVSKRKTPLE RRLASQRQQR
701: DPPLITNSDP ASNRDT

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.