Factsheet for TraesCS3D01G332700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G276800.5
TraesCS5B01G276400.1
TraesCS5D01G284200.4
TraesCS6A01G251400.1
TraesCS6A01G271600.1
TraesCS6A01G274500.1
TraesCS6B01G273900.1
TraesCS6B01G298800.1
TraesCS6B01G302000.1
TraesCS6D01G233200.1
TraesCS6D01G251800.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	TraesCS5A01G276800.5	AT1G51580.1	21798944
AT5G17790.1	TraesCS5B01G276400.1	AT1G51580.1	21798944
AT5G17790.1	TraesCS5D01G284200.4	AT1G51580.1	21798944
AT5G17790.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G17790.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G17790.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G17790.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT5G17790.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT5G17790.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT5G17790.1	TraesCS6A01G271600.1	AT4G19170.1	15340011
AT5G17790.1	TraesCS6B01G298800.1	AT4G19170.1	15340011
AT5G17790.1	TraesCS6D01G251800.1	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G339100.1	Wheat	nucleus	81.79	81.87
TraesCS3B01G370800.2	Wheat	plastid	78.8	79.31
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	75.45	75.93
EES01648	Sorghum	plastid	48.01	58.95
Os01t0815700-01	Rice	plastid	49.64	57.68
Zm00001d043095_P004	Maize	mitochondrion	46.65	53.59
Zm00001d012529_P001	Maize	plastid	43.21	52.82
CDX70775	Canola	plastid	26.81	42.84
CDX78760	Canola	plastid, vacuole	26.81	42.23
CDY38459	Canola	plastid	26.9	41.48
Bra006420.1-P	Field mustard	plastid, vacuole	26.63	41.06
Bra002106.1-P	Field mustard	plastid	26.54	40.92
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	32.07	40.27
CDY16887	Canola	plastid	26.0	40.03
KRG94930	Soybean	mitochondrion, plastid, vacuole	29.89	39.62
KRH64967	Soybean	plastid	29.26	39.34
PGSC0003DMT400028376	Potato	plastid	30.07	38.2
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	30.07	37.99
AT5G17790.1	Thale cress	plastid	25.09	36.54
GSMUA_Achr7P21740_001	Banana	nucleus	31.7	31.14
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	19.02	29.21
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	9.69	18.51
TraesCS4D01G046600.1	Wheat	mitochondrion	8.15	17.01
TraesCS6D01G342400.1	Wheat	mitochondrion	10.96	14.77

Protein Annotations

EnsemblPlants:TraesCS3D01G332700.1	EnsemblPlantsGene:TraesCS3D01G332700	Gene3D:4.10.1060.10	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf
ncoils:Coil	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30	PFAM:PF00641	PFscan:PS50199	ScanProsite:PS01358
SEG:seg	SMART:SM00547	SUPFAM:SSF90209	MapMan:16.12.5.3	:	:

Description

No Description!

Coordinates

chr3D:+:445016651..445021809

Molecular Weight (calculated)

119868.0 Da

IEP (calculated)

8.266

GRAVY (calculated)

-0.846

Length

1104 amino acids

Sequence
(BLAST)

0001: MPRYFFHSAV RLNPTIRWAA NFGSSRQRPT GRRRRTLSSS RSRLSAVAAV AMGSASKLLS SLLLTSSPLR LRPSAAAFAL ILSSRTAASR RQHLLSSPSP
0101: LRTLSTSAAA AAASPLPYSS SSASSTPPLH APFPEWSRLV DRLAAAGYAA RAPSPADELA VASGSGLSAE AESAVSSCLA FARDRPDLLR SLPTKDVEVV
0201: VSNVAPALFK GGEESAQRLQ QYLAGEEDNA IQSVRAETVD IVRYLLSYTY SSSNNYLEDK ELTDSAVRNI LAELVNSSGL PHSFSFAEPT VESQPERFSR
0301: HPGQNVEMKR GDWICTRCSF MNFARNARCL ECNEHRPKKM LTGGEWECPQ CEFYNYGRNM SCLRCACKRP ATTASAGAGL GGVAELLSVT NAGRSEIERK
0401: LAESDEKAER WLSKVSQLDD SADLSSLAAD EDFPEIMPMR KGVNKFVVST RKTPLERRLA SAQYSSNNSP QATASDSKIS QTLDRILGRS ASTSAPNNQS
0501: DNGGVNAETP RKLTGHLGDI DPVPFVPLSA DLFTKPQNAK SNEQADRDCQ INRETGSSTP GITQASTERK DVDRSLDTAE KWSKKVAELD SVNDLSSAIS
0601: DEDFPDIMPM RKGENRFVIS KKKDRSLTSP QYQRRSVLEQ ADNSDFVPFV PFPPDYFAKK DAPAESTPDT GIVSESSPSA DKLPETNASS RHSGDSQNTS
0701: QVIGPQGSSI MSNENWNKNY SQQSSSPGGY TPGGSSSQQY QQQPYEMGDR STGTPNSGAW NPNYSQGTST DVRGGSSNYQ HQQQPHEVGD RSRGTSNAGA
0801: LNTKYSQGRF NDGRGGSNNY QHQQQPHEVG DRSSGTSNTV AWNTNHSQGR FNDGRGGSNN YQHQQQPREV GDQSSGTSNT GAWNTNYSQS QGRFNDGRGG
0901: SGNYQYQTQP HQAGGRPSGT SNTHAPNTNY SQGSFSEGRD TSTYNQGSYS TQPSYTPGYT NHSNNHAWSS SNNHNPSGSH PDSRVATCGI GSTNPNQATG
1001: YSSYGSGGYT GKSLEGSAVK DPDPLDMSEE AKAERWFRRA AQIKDISELA NIPDEDFPEI MPMRKGVNRF VVSKRKTPLE RRLTSPQYRR NLPIVSSEPD
1101: KDAS

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.