Factsheet for Bra018736.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93678	Canola	plastid	99.04	99.04
AT1G48570.1	Thale cress	plastid	79.86	73.19
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	49.64	50.49
Solyc03g118680.2.1	Tomato	plastid	39.81	40.79
KRH39085	Soybean	plastid	44.6	40.61
PGSC0003DMT400014472	Potato	plastid	39.09	40.05
KRH48632	Soybean	mitochondrion, plastid	43.41	39.18
GSMUA_Achr6P24110_001	Banana	plastid	37.17	36.38
Os03t0708900-01	Rice	nucleus	34.29	28.37
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	33.33	28.02
Zm00001d013449_P001	Maize	mitochondrion	34.29	27.71
TraesCS4A01G269900.1	Wheat	plastid	35.97	25.91
TraesCS4B01G044200.1	Wheat	plastid	35.97	25.91
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	35.73	25.78
Bra016196.1-P	Field mustard	mitochondrion, nucleus	28.3	25.43
EER93589	Sorghum	mitochondrion, plastid	33.81	25.36
Bra027952.1-P	Field mustard	nucleus	28.06	14.03
Bra006420.1-P	Field mustard	plastid, vacuole	22.78	13.27
Bra002106.1-P	Field mustard	plastid	22.54	13.13

Protein Annotations

EnsemblPlants:Bra018736.1	EnsemblPlants:Bra018736.1-P	EnsemblPlantsGene:Bra018736	Gene3D:4.10.1060.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23111	PANTHER:PTHR23111:SF40
PFAM:PF00641	PFscan:PS50199	ScanProsite:PS01358	SEG:seg	SMART:SM00547	SUPFAM:SSF90209
UniParc:UPI000253ECDD	UniProt:M4DQE3	MapMan:16.12.5.3	:	:	:

Description

AT1G48570 (E=6e-120) | zinc finger (Ran-binding) family protein

Coordinates

chrA06:+:2255429..2257954

Molecular Weight (calculated)

47373.2 Da

IEP (calculated)

8.556

GRAVY (calculated)

-0.637

Length

417 amino acids

Sequence
(BLAST)

001: MSSSRIFLVG NSIFRPQNPS SFPLSLNRFP SVSLRFRCFS NATATAAASP TVEPDSPSSP SPHPWPEWIN FVDRLKTKGY FTKNIEDDTV YQEMNVVKDA
101: CLSFARDRYD VLRSLSSSDV QALVERGCPN LFRKTVNSSK RIRAHVKLDE GDVCGSCELR SSCDRAYVIL KDTEADARTV DVMRLLLFNA LDSVVVSRGE
201: VPPGKELVHE SARRLLLELL ELSEKPVNPV LPKPAAKVAL PPKERVFKSR SDEPSQRVRS QYSADWACPK CDFLNFARNE RCRECNEVAD RRSVAAVVKE
301: GDWLCPECNF SNFSRNQSCL KCKAKGPKRS SMENIEMKKG DWNCSGCGFM NFSSNKKCKQ CREQRPPRQL EPGEWECPSC DFLNYRRNTV CKKCECKRPS
401: ESNNHEDDHS WKRPALL

Best Arabidopsis Sequence Match ( AT1G48570.1 )
(BLAST)

001: MSSSRIFLVG NSIFRPHKPS FPLSFNRFPS VSLRFRCFSS DAAAAVATTV DSDSPSLTPH PWPEWITFVD RLKTKGYFTK DTEDDTVYQE MILVKDACLS
101: FARDRYDVLR SLSSGDVQAL VERGCPNLFR KTVNSSKRIR AHVKLNEGDV CGSCDLRSSC DRAYVILKDT EADARTVDVM RLLLFNALDS IVISRGEVPP
201: GKELVHESAR RLLLELVEFS EKPLIPALPK PSSKESSLPS KERAFKSRND EPSQRVAFKS RNDDPSQRVA FKSRNDEPSH RVAFKSRNDE SSQRDRPLYS
301: ADWACPKCDF VNFARNERCR ECNEVADRRP VAAVVKEGDW LCPECSFLNF TRNQSCLKCK AKGPKKTSMV NIVEMKKGDW NCTGCGYMNF ASNKQCRECR
401: EQRHKTLAEP GDWECPSCDF VNFRRNDACK KCECKRPSQA NNDQEDHTWK RPALV

Arabidopsis Description

T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.