CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013449_P001	Maize	mitochondrion	68.53	73.84
Os03t0708900-01	Rice	nucleus	49.28	54.37
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	46.4	52.02
TraesCS4B01G044200.1	Wheat	plastid	49.28	47.32
TraesCS4A01G269900.1	Wheat	plastid	49.28	47.32
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	48.56	46.71
GSMUA_Achr6P24110_001	Banana	plastid	34.71	45.31
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	27.88	37.8
PGSC0003DMT400014472	Potato	plastid	27.52	37.59
Solyc03g118680.2.1	Tomato	plastid	26.98	36.85
CDY40590	Canola	plastid	25.36	34.06
Bra018736.1-P	Field mustard	plastid	25.36	33.81
CDX93678	Canola	plastid	25.18	33.57
KRH48632	Soybean	mitochondrion, plastid	25.9	31.17
KRH39085	Soybean	plastid	25.18	30.57
AT1G48570.1	Thale cress	plastid	24.28	29.67
KXG37731	Sorghum	mitochondrion	23.38	24.71
EER98389	Sorghum	mitochondrion, plastid	23.02	16.04
EES01648	Sorghum	plastid	20.32	12.57

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	EntrezGene:8062922	UniProt:C5WNQ2	ncoils:Coil	EnsemblPlants:EER93589
ProteinID:EER93589	ProteinID:EER93589.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876
PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111	PANTHER:PTHR23111:SF40	SMART:SM00547
EnsemblPlantsGene:SORBI_3001G119600	SUPFAM:SSF90209	UniParc:UPI0001A828A9	RefSeq:XP_002466591.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:9292330..9296767

Molecular Weight (calculated)

61950.9 Da

IEP (calculated)

8.810

GRAVY (calculated)

-0.708

Length

556 amino acids

Sequence
(BLAST)

001: MTASSSRLLK LTLSSYFLRS CRIASSSLLP TTFRGHPGPL HSLRFCSAVP AVVDVAADPA VAAVSAGHPW PEWGDFLDKL RAKGYFEQGV PSSGVSSGEG
101: AAGVRDAAVA AASEDAAAAA SGNTVVAAVD SAVSLEDIYR FRDENRVKNA CLKFARDRFD LLSSLPKQDI QAIVKCGCPN KNRKPVNSAK RLREFVQVKE
201: EDACSICKFR ESCDKAFITP DAEAEVKTVD VVRILLSYAM DKNLSGENSV IESVQESAKK LLSKLTELSD TKIDESLPKP ASQAPRKAQG SDGKGRETTA
301: VEMKKGDWLC TNCNFLNFAR NVRCRECKAD GPKKIEVAMA EMKMGDWICT QCQFMNFSRN NICFKCEEPR PKRQLNPGEW ECPSCDYVNF RRNILCKKCN
401: QDRPEDDTQD SQLGLRKTRG AGKSRRFDYI DQKSDNDYDA SPYEGFRKRG ASMRKPDQRR TTARSRGFDD LEDDYNASPY EGFRKRGASM RKPDQRRTTA
501: KSSGFDDLED GLLTAKSRRA KEDEDDEVLP YEGVRKHVVS RRATPSQRRF TAARNQ

Best Arabidopsis Sequence Match ( AT1G70650.2 )
(BLAST)

001: MLRFFKTDHR LFHRIIGYTR PFHGLAKTQN AEIARPGLVD PSSHPWPEWL DLMGMLAKKG YFEESLIPLM SSKESNHIRT ACLNFARHRF TLVRNLSKKD
101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV
201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL
301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS
401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLVPRNF RLLEELERGE KGIGDGTVSY GMDDADDILM QSWTGTILGP HNTAYEGKIF
501: QLKLFCGKDY PESPPTVRFQ SRINMACVNP ENGVVDPSHF PMLSNWRREF TMEDLLIQLK KEMMSSQNRK LAQPLEGNEE GRTDPKGLVV KCCVM

Arabidopsis Description

Ran BP2/NZF zinc finger-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I6V2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.