Factsheet for VIT_17s0000g02310.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40590	Canola	plastid	51.22	50.72
Bra018736.1-P	Field mustard	plastid	50.49	49.64
CDX93678	Canola	plastid	50.24	49.4
Solyc03g118680.2.1	Tomato	plastid	45.85	46.19
KRH39085	Soybean	plastid	50.98	45.63
PGSC0003DMT400014472	Potato	plastid	44.39	44.72
KRH48632	Soybean	mitochondrion, plastid	50.24	44.59
AT1G48570.1	Thale cress	plastid	48.54	43.74
GSMUA_Achr6P24110_001	Banana	plastid	42.44	40.85
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	38.78	32.06
Os03t0708900-01	Rice	nucleus	38.05	30.95
Zm00001d013449_P001	Maize	mitochondrion	38.05	30.23
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	40.98	29.07
TraesCS4B01G044200.1	Wheat	plastid	40.49	28.67
TraesCS4A01G269900.1	Wheat	plastid	40.24	28.5
VIT_01s0011g05660.t01	Wine grape	nucleus	30.24	28.05
EER93589	Sorghum	mitochondrion, plastid	37.8	27.88
VIT_14s0128g00850.t01	Wine grape	plastid	30.98	15.47
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	26.59	12.4

Protein Annotations

EntrezGene:100268018	wikigene:100268018	MapMan:16.12.5.3	Gene3D:4.10.1060.10	ProteinID:CBI15580	ProteinID:CBI15580.3
UniProt:D7SJB9	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876
EntrezGene:LOC100268018	wikigene:LOC100268018	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111
PANTHER:PTHR23111:SF40	SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI00015C9943	ArrayExpress:VIT_17s0000g02310	EnsemblPlantsGene:VIT_17s0000g02310
EnsemblPlants:VIT_17s0000g02310.t01	RefSeq:XP_002278671	RefSeq:XP_002278671.2	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	:

Description

No Description!

Coordinates

chr17:-:1993310..2012387

Molecular Weight (calculated)

46641.9 Da

IEP (calculated)

8.523

GRAVY (calculated)

-0.520

Length

410 amino acids

Sequence
(BLAST)

001: MAASRFSLFG TSVLRHRTNV SPIPAIRLSF SPSRFTCSAA VDTVTADSTD SHHRHPWPEW VTFIDRLKTK GYFSEALPAS ADYDTNMNLF KDACLIFARD
101: RFDVFKSLSR KDIQTVVEGG CPNLFRKAVN SAKRLRAFVR LDEGDVCSAC NLRGSCDRAY VLLKESEAAA RTVDIVRILL FYALDPLVTS GEKPPGRELV
201: EVSARKLLSE LIELSDTPLD PALAKPAAIP PRRKEQHMNL TDDEMPQNVQ MKKGDWICPN CNFLNFARNT QCMKCREDGP KRDSLNVIEM KKGDWTCPEC
301: NFMNFSRNIR CLKCRAEGPK RVDAADIPMK KGDWNCPQCA FMNFASKTEC FRCREPRPKR QLNPGEWECP SCDFVNYRRN TVCLKCNRDQ PKEAATPYEE
401: HVWKKPSNLG

Best Arabidopsis Sequence Match ( AT1G48570.1 )
(BLAST)

001: MSSSRIFLVG NSIFRPHKPS FPLSFNRFPS VSLRFRCFSS DAAAAVATTV DSDSPSLTPH PWPEWITFVD RLKTKGYFTK DTEDDTVYQE MILVKDACLS
101: FARDRYDVLR SLSSGDVQAL VERGCPNLFR KTVNSSKRIR AHVKLNEGDV CGSCDLRSSC DRAYVILKDT EADARTVDVM RLLLFNALDS IVISRGEVPP
201: GKELVHESAR RLLLELVEFS EKPLIPALPK PSSKESSLPS KERAFKSRND EPSQRVAFKS RNDDPSQRVA FKSRNDEPSH RVAFKSRNDE SSQRDRPLYS
301: ADWACPKCDF VNFARNERCR ECNEVADRRP VAAVVKEGDW LCPECSFLNF TRNQSCLKCK AKGPKKTSMV NIVEMKKGDW NCTGCGYMNF ASNKQCRECR
401: EQRHKTLAEP GDWECPSCDF VNFRRNDACK KCECKRPSQA NNDQEDHTWK RPALV

Arabidopsis Description

T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.