Factsheet for PGSC0003DMT400014472

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118680.2.1	Tomato	plastid	86.0	86.0
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	44.72	44.39
GSMUA_Achr6P24110_001	Banana	plastid	44.96	42.96
KRH39085	Soybean	plastid	44.72	39.74
Bra018736.1-P	Field mustard	plastid	40.05	39.09
CDY40590	Canola	plastid	39.31	38.65
CDX93678	Canola	plastid	39.56	38.61
KRH48632	Soybean	mitochondrion, plastid	42.51	37.45
AT1G48570.1	Thale cress	plastid	39.56	35.38
Os03t0708900-01	Rice	nucleus	40.29	32.54
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	37.35	30.65
Zm00001d013449_P001	Maize	mitochondrion	37.84	29.84
PGSC0003DMT400064951	Potato	mitochondrion, nucleus	34.15	28.96
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	39.56	27.85
TraesCS4A01G269900.1	Wheat	plastid	39.56	27.81
TraesCS4B01G044200.1	Wheat	plastid	39.56	27.81
EER93589	Sorghum	mitochondrion, plastid	37.59	27.52
PGSC0003DMT400063483	Potato	mitochondrion, plastid	28.75	15.1
PGSC0003DMT400028376	Potato	plastid	23.1	10.82

Protein Annotations

EntrezGene:102595166	MapMan:16.12.5.3	Gene3D:4.10.1060.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001876	UniProt:M1A4A1	PFAM:PF00641	EnsemblPlantsGene:PGSC0003DMG400005673	PGSC:PGSC0003DMG400005673	EnsemblPlants:PGSC0003DMT400014472
ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111	PANTHER:PTHR23111:SF40	SMART:SM00547	SUPFAM:SSF90209
UniParc:UPI000296EABA	RefSeq:XP_006341522.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	:	:

Description

Zinc finger (Ran-binding) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005673]

Coordinates

chr3:-:58216381..58220772

Molecular Weight (calculated)

45845.0 Da

IEP (calculated)

8.834

GRAVY (calculated)

-0.544

Length

407 amino acids

Sequence
(BLAST)

001: MSASRLFFLL GASTVRNCNK PTNISSPFSP FRFTKPLLSP VVRFRSYNCI SATIETNTIE PLVSPKNHPW PEWVAFVDRL KSKGYITEKS SSTGEDGDGS
101: IYTDMNLLKD ACLNFSRDRS DIFKKLSTQD MQKVVEKGCP NLFRKVVNSA KRLRIHLNLD EGEVCGACNF RGSCDRAYLI LKESEGVART VDIVRVLLVY
201: AFDSAVISGG AMPPGSELIE VSARQLLSEL VELSETPIDP DHPTPAPKAS PRKKQSVGSR TDGLEGVEMK RRDLTGLEGE MSKRNVEMKQ GDWVCSQCTF
301: MNFARNAQCL RCKSKGPSRD APVVKEMKKG DWNCPQCTFM NFASNTKCLR CQEQRPKRQL NPGEWECPSC DFLNFRSNMA CKKCTCERPK DAKTQSKYEQ
401: QLWTKPY

Best Arabidopsis Sequence Match ( AT1G48570.1 )
(BLAST)

001: MSSSRIFLVG NSIFRPHKPS FPLSFNRFPS VSLRFRCFSS DAAAAVATTV DSDSPSLTPH PWPEWITFVD RLKTKGYFTK DTEDDTVYQE MILVKDACLS
101: FARDRYDVLR SLSSGDVQAL VERGCPNLFR KTVNSSKRIR AHVKLNEGDV CGSCDLRSSC DRAYVILKDT EADARTVDVM RLLLFNALDS IVISRGEVPP
201: GKELVHESAR RLLLELVEFS EKPLIPALPK PSSKESSLPS KERAFKSRND EPSQRVAFKS RNDDPSQRVA FKSRNDEPSH RVAFKSRNDE SSQRDRPLYS
301: ADWACPKCDF VNFARNERCR ECNEVADRRP VAAVVKEGDW LCPECSFLNF TRNQSCLKCK AKGPKKTSMV NIVEMKKGDW NCTGCGYMNF ASNKQCRECR
401: EQRHKTLAEP GDWECPSCDF VNFRRNDACK KCECKRPSQA NNDQEDHTWK RPALV

Arabidopsis Description

T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.