Factsheet for PGSC0003DMT400064951

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014510.2.1	Tomato	nucleus, plastid	78.33	78.33
VIT_01s0011g05660.t01	Wine grape	nucleus	42.92	46.61
GSMUA_AchrUn_...	Banana	nucleus	37.29	46.13
CDX96267	Canola	mitochondrion	40.42	41.72
Bra016196.1-P	Field mustard	mitochondrion, nucleus	39.17	40.52
CDY11563	Canola	mitochondrion	38.33	39.91
Os03t0712200-01	Rice	mitochondrion	42.71	39.2
KRH70339	Soybean	mitochondrion	42.92	39.02
TraesCS4B01G046800.1	Wheat	mitochondrion	42.5	38.56
TraesCS4A01G267600.1	Wheat	mitochondrion	41.88	38.14
TraesCS4D01G046600.1	Wheat	mitochondrion	41.88	38.0
HORVU4Hr1G007570.1	Barley	nucleus	25.21	37.23
KRH33226	Soybean	nucleus	25.21	37.12
Zm00001d013432_P001	Maize	mitochondrion	40.21	36.62
KXG37731	Sorghum	mitochondrion	40.0	36.5
PGSC0003DMT400014472	Potato	plastid	28.96	34.15
AT1G70650.2	Thale cress	nucleus	39.38	31.76
PGSC0003DMT400063483	Potato	mitochondrion, plastid	25.42	15.74
PGSC0003DMT400028376	Potato	plastid	17.92	9.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400064951	EnsemblPlantsGene:PGSC0003DMG400025225	EntrezGene:102585495	Gene3D:4.10.1060.10	InterPro:IPR001876	InterPro:Multihaem_cyt_sf
InterPro:Znf_RanBP2	ncoils:Coil	PANTHER:PTHR23111	PANTHER:PTHR23111:SF23	PFAM:PF00641	PFscan:PS50199
PGSC:PGSC0003DMG400025225	RefSeq:XP_006351065.1	ScanProsite:PS01358	SEG:seg	SMART:SM00547	SUPFAM:SSF48695
UniParc:UPI0002964B24	UniProt:M1CD57	MapMan:16.12.5.3	:	:	:

Description

Zinc finger (Ran-binding) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025225]

Coordinates

chr8:-:7882343..7885414

Molecular Weight (calculated)

54908.8 Da

IEP (calculated)

8.037

GRAVY (calculated)

-0.772

Length

480 amino acids

Sequence
(BLAST)

001: MLKIFTSKGS NSILLKIIQN CSISNFHTKN SAIQFILEEG KTLQSQQTTK QNEEAEFSRK PNSGIQTPQL WPEWVNLMDK LLKTGYFEGF GNPFGNAQWD
101: ANLIRTACLN FARDRFDLIR YLSRQDIGVL ASCGCPSMDR KVVNSGKRLR VLFGIEEGNV CSFCILRGSC ERAYVVPRED QGGRTVDVMR LLLTYGLNSI
201: TGAVENKPSL NKRVEESAKK LLKEIVNFSS EELFCETKKS TNPWNPSVQG DHQEEGQINA LRKHGDWVCP KCNFLNFSRN AKCLRCNGLN HERLNKLRQE
301: QDHLPLKKGD WICSKCHFMN FAKNTRCLQC TEKPPKRQLN PGEWECESCN YINFKRNTVC LKCDHRRPKA SSCAGSSCGS TKQNRAISRT RPYFGELNEE
401: TDEEWQLVES ECEDRLSSTP ENQVVDFPVL GGNSELSRDA TKQERWKTGN ERENGDELNN KYFQNSGNEE MDEWFGHKNA

Best Arabidopsis Sequence Match ( AT1G70650.1 )
(BLAST)

001: MLRFFKTDHR LFHRIIGYTR PFHGLAKTQN AEIARPGLVD PSSHPWPEWL DLMGMLAKKG YFEESLIPLM SSKESNHIRT ACLNFARHRF TLVRNLSKKD
101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV
201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL
301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS
401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLGNISD DGEMDDWFVS KQDRST

Arabidopsis Description

Ran BP2/NZF zinc finger-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I6V2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.