Factsheet for Os03t0712200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G007570.1	Barley	nucleus	44.17	71.08
TraesCS4A01G267600.1	Wheat	mitochondrion	69.22	68.69
TraesCS4B01G046800.1	Wheat	mitochondrion	69.41	68.62
TraesCS4D01G046600.1	Wheat	mitochondrion	68.83	68.05
KXG37731	Sorghum	mitochondrion	67.5	67.11
Zm00001d013432_P001	Maize	mitochondrion	64.82	64.33
GSMUA_AchrUn_...	Banana	nucleus	40.15	54.12
VIT_01s0011g05660.t01	Wine grape	nucleus	36.52	43.21
PGSC0003DMT400064951	Potato	mitochondrion, nucleus	39.2	42.71
CDY11563	Canola	mitochondrion	37.09	42.08
CDX96267	Canola	mitochondrion	36.71	41.29
Solyc08g014510.2.1	Tomato	nucleus, plastid	37.67	41.04
Bra016196.1-P	Field mustard	mitochondrion, nucleus	36.33	40.95
KRH70339	Soybean	mitochondrion	39.96	39.58
KRH33226	Soybean	nucleus	22.94	36.81
AT1G70650.2	Thale cress	nucleus	36.71	32.27
Os03t0708900-01	Rice	nucleus	26.2	27.18
Os07t0404300-01	Rice	nucleus	22.56	18.24
Os01t0815800-01	Rice	nucleus	5.16	16.67
Os01t0815700-01	Rice	plastid	16.63	9.16

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	EntrezGene:4333891	ProteinID:AAK18835.1	ProteinID:ABF98522.1	EMBL:AK073205
EMBL:AK098968	ProteinID:BAF12976.1	ProteinID:BAS86041.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001876	EnsemblPlantsGene:Os03g0712200	EnsemblPlants:Os03t0712200-01	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199
PANTHER:PTHR23111	PANTHER:PTHR23111:SF23	UniProt:Q10E04	SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI00000A0EF7
RefSeq:XP_015632879.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

Zinc finger, RanBP2-type domain containing protein. (Os03t0712200-01)

Coordinates

chr3:+:28774588..28777241

Molecular Weight (calculated)

59261.2 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.776

Length

523 amino acids

Sequence
(BLAST)

001: MRHRVGPAAA AAAALRRFSH LRPPAPPDPR LAFLRSEFDG REPGRQPPSP ETREEPKGGE RARSPVAVDI AHPWPEWVAL MELLLQRGHL DASVFAGGAA
101: GSPSKDSNVI RTACLRFGRE RPELIRHLSR WDIQVALRYG CPSIDRKVVN SGKRLRAHVG LDEGEVCSQC NLRGGCERAY VKARKEEIGR TVDVMRILLT
201: YGLDTVTGNV ENRACLNKTV KESIKSLLNE IVGFDSMGPG SSTEKPTHRM PKGQSSIPMK QGDWNCPKCN FLNFAKNIKC LRCNGEFEER YQLLHENQEH
301: LPLKKGDWIC KRCNFLNFAK NTRCLQCHEK PTNRQLNPGE WECVSCNYLN FKRNAFCLKC GWKRPKSLNN QDSIESQRDL DDNKHSAISF IQDGIQSRRQ
401: ILQNKAPLSD EDSDFWSSEE EGAYHSDKNI PPIKKDYKFL ESFPIIGGRT AMSQDPLERE KWKDEMSRRN KGLLTEVSEE SNRPSCPVRI PRSIEQIESG
501: DDDDDDISSW FSGGTSNINM KKA

Best Arabidopsis Sequence Match ( AT1G70650.1 )
(BLAST)

001: MLRFFKTDHR LFHRIIGYTR PFHGLAKTQN AEIARPGLVD PSSHPWPEWL DLMGMLAKKG YFEESLIPLM SSKESNHIRT ACLNFARHRF TLVRNLSKKD
101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV
201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL
301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS
401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLGNISD DGEMDDWFVS KQDRST

Arabidopsis Description

Ran BP2/NZF zinc finger-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I6V2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.