Factsheet for Bra007825.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34746	Canola	cytosol	21.57	96.88
CDX76782	Canola	mitochondrion	89.91	84.48
Bra007826.1-P	Field mustard	plastid	78.78	75.63
AT3G63520.1	Thale cress	cytosol	70.43	75.28
CDY34747	Canola	cytosol	16.17	68.89
Bra040449.1-P	Field mustard	cytosol	64.87	68.19
VIT_13s0064g00810.t01	Wine grape	cytosol	58.09	65.49
VIT_13s0064g00840.t01	Wine grape	extracellular	61.91	65.2
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	60.35	64.26
Zm00001d034075_P001	Maize	cytosol	4.0	63.89
Solyc01g087250.2.1	Tomato	cytosol, plastid	60.0	63.3
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	58.61	61.61
TraesCS5D01G001900.1	Wheat	cytosol, golgi	58.43	61.2
TraesCS5A01G001500.2	Wheat	cytosol	58.26	61.13
OQU93261	Sorghum	cytosol	57.74	61.03
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	57.91	60.77
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	60.52	60.63
Os12t0640600-01	Rice	plasma membrane	56.52	60.19
Zm00001d048373_P002	Maize	cytosol, plasma membrane	57.22	59.82
Solyc01g087260.2.1	Tomato	plastid	56.7	59.82
TraesCS5B01G001800.1	Wheat	cytosol	55.13	58.7
HORVU5Hr1G000320.9	Barley	plastid	57.74	58.55
TraesCS5D01G002800.1	Wheat	cytosol	54.96	57.35
HORVU4Hr1G006300.1	Barley	cytosol	54.78	56.76
TraesCS5A01G002200.1	Wheat	cytosol	52.0	56.52
TraesCS5A01G002400.1	Wheat	cytosol	54.78	55.95
TraesCS5D01G002900.1	Wheat	plastid	53.39	50.0
Bra013378.1-P	Field mustard	peroxisome	28.7	32.74
Bra001552.1-P	Field mustard	cytosol	22.26	32.32
Bra012603.1-P	Field mustard	cytosol	23.3	30.32
Bra015002.1-P	Field mustard	plastid	29.22	28.72
Bra008358.1-P	Field mustard	plastid	28.52	27.94
Bra032359.1-P	Field mustard	plastid	28.35	27.72
Bra035033.1-P	Field mustard	plastid	28.87	27.57
Bra020970.1-P	Field mustard	plastid	27.13	27.51
Bra021558.1-P	Field mustard	plastid	28.35	27.26
Bra027336.1-P	Field mustard	plastid	27.3	26.3
Bra013298.1-P	Field mustard	plastid	26.43	26.16

Protein Annotations

EnsemblPlants:Bra007825.1	EnsemblPlants:Bra007825.1-P	EnsemblPlantsGene:Bra007825	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055	SEG:seg	UniParc:UPI0002542D0B	UniProt:M4CUD1
MapMan:35.1	:	:	:	:	:

Description

AT3G63520 (E=8e-127) CCD1, ATCCD1, ATNCED1, NCED1 | CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA09:-:31091500..31097009

Molecular Weight (calculated)

65709.3 Da

IEP (calculated)

8.292

GRAVY (calculated)

-0.344

Length

575 amino acids

Sequence
(BLAST)

001: MFSLSPPSSP RGASVRHTSR LHYRHLLLPK RPHYSVTATK HYQNNPYPHN NLSNHRPWAL QHFSRSLRWR RSLLNSVSDQ TFMEEKLGDD GILSVNPKPS
101: KGFSSKLIDL LESLLVKLMH DTSLPLNYLS GNFAPLRDET PPVKDLPVHG FLPECLNGEF LRVGPNPKFD PVAGYLWQMI HGVRIKEGKA TYSSRYVKTS
201: RLKQEEFFGA AKLMKKGIFG LLMANMQHLR TKLKVLDDSY GNGTANTSLV YHHGHLLALQ ETDKPYVIKV LEDGDLQTLG MIDYDKRLTH SFTAHPKVDP
301: VTEPIMMHDF AITENYSIFM DLPMHFRPKE MVKEKKMLYS FDPTKKARFG VLPRYAKDEL MIKWFELPNC FIFHNANAWE EDEEVVLITC RLENPNLDMV
401: SGNDEEVLRS FSNELYEMRF NMKTGSASQK KLSASSVDFP RINESYTGKK QRYVYGIGTF LDGISKVTGI IKFDLHAEAE TSKTMLQIGG NIKGIYKMGH
501: GIYGSDPIYV PRETAEEDDG YLIVLIYLHA CFLTDAKTMS SEPVAVVELP HRVPYGFHAL FVTEVLLYEI YILPS

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.