Factsheet for Zm00001d048373_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034075_P001	Maize	cytosol	6.55	100.0
OQU93261	Sorghum	cytosol	95.27	96.32
Os12t0640600-01	Rice	plasma membrane	88.73	90.37
TraesCS5D01G001900.1	Wheat	cytosol, golgi	90.18	90.35
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	89.27	89.6
TraesCS5A01G001500.2	Wheat	cytosol	89.09	89.42
HORVU5Hr1G000320.9	Barley	plastid	88.73	86.07
TraesCS5D01G002800.1	Wheat	cytosol	84.55	84.39
TraesCS5B01G001800.1	Wheat	cytosol	81.64	83.15
HORVU4Hr1G006300.1	Barley	cytosol	82.55	81.8
TraesCS5A01G002400.1	Wheat	cytosol	83.45	81.53
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	80.18	80.62
TraesCS5A01G002200.1	Wheat	cytosol	76.55	79.58
VIT_13s0064g00810.t01	Wine grape	cytosol	72.55	78.24
CDX93902	Canola	cytosol	74.18	77.71
CDY53711	Canola	cytosol	73.64	77.14
Solyc01g087250.2.1	Tomato	cytosol, plastid	76.36	77.06
AT3G63520.1	Thale cress	cytosol	75.27	76.95
VIT_13s0064g00840.t01	Wine grape	extracellular	76.0	76.56
Solyc01g087260.2.1	Tomato	plastid	73.09	73.76
CDY34748	Canola	endoplasmic reticulum, extracellular	64.18	73.08
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	71.27	72.59
TraesCS5D01G002900.1	Wheat	plastid	80.91	72.48
CDY34746	Canola	cytosol	16.73	71.88
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	74.36	71.25
Bra040449.1-P	Field mustard	cytosol	69.45	69.84
Bra007826.1-P	Field mustard	plastid	69.64	63.94
CDX76782	Canola	mitochondrion	68.91	61.93
CDX76783	Canola	plastid	68.73	61.87
Bra007825.1-P	Field mustard	plastid	59.82	57.22
CDY34747	Canola	cytosol	13.64	55.56
Zm00001d027690_P001	Maize	cytosol	5.64	40.26
Zm00001d008638_P001	Maize	cytosol	5.82	39.02
Zm00001d023690_P001	Maize	cytosol	9.09	38.17
Zm00001d018819_P001	Maize	plastid	37.09	35.6
Zm00001d007876_P001	Maize	plastid	36.73	35.13
Zm00001d031086_P001	Maize	plastid	35.64	34.45
Zm00001d000157_P001	Maize	cytosol	6.36	33.33
Zm00001d033222_P001	Maize	extracellular	36.18	32.95
Zm00001d041319_P001	Maize	plastid	36.18	32.95
Zm00001d013689_P001	Maize	plastid	36.0	32.95
Zm00001d000095_P001	Maize	cytosol	9.45	31.71
Zm00001d051556_P001	Maize	plastid	35.64	30.72
Zm00001d017766_P001	Maize	plastid	35.09	30.2
Zm00001d042076_P001	Maize	cytosol, plastid	19.82	25.95
Zm00001d020069_P002	Maize	plastid	25.09	24.69
Zm00001d022623_P001	Maize	cytosol	16.73	24.66
Zm00001d045232_P001	Maize	plastid	27.09	24.31
Zm00001d023458_P001	Maize	cytosol	6.18	24.11
Zm00001d019813_P001	Maize	plastid	8.0	23.28
Zm00001d035724_P001	Maize	plastid	24.0	20.79
Zm00001d009286_P001	Maize	plastid	8.91	19.44
Zm00001d033377_P001	Maize	plastid	8.91	17.25
Zm00001d027592_P001	Maize	mitochondrion	12.55	16.2

Protein Annotations

EntrezGene:732715	MapMan:9.1.6.3.1	ProteinID:AQL09521.1	UniProt:B4FBA4	EMBL:BT034392	InterPro:Carotenoid_Oase
EMBL:EU973966	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794	GO:GO:0005886
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009506	GO:GO:0009987
GO:GO:0016020	GO:GO:0016118	GO:GO:0016121	GO:GO:0016124	GO:GO:0016702	GO:GO:0045549
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37
UniParc:UPI0000F0779D	EnsemblPlantsGene:Zm00001d048373	EnsemblPlants:Zm00001d048373_P002	EnsemblPlants:Zm00001d048373_T002	:	:

Description

white cap1Carotenoid 910(9'10')-cleavage dioxygenase 1

Coordinates

chr9:-:155236317..155242285

Molecular Weight (calculated)

62059.3 Da

IEP (calculated)

6.177

GRAVY (calculated)

-0.336

Length

550 amino acids

Sequence
(BLAST)

001: MGTEAEQPDM DSHRNDGVVV VPAPRPRKGL ASWALDLLES LAVRLGHDKT KPLHWLSGNF APVVEETPPA PNLSVRGHLP ECLNGEFVRV GPNPKFAPVA
101: GYHWFDGDGM IHAMRIKDGK ATYVSRYVKT ARLKQEEYFG GAKFMKIGDL KGFFGLFMVQ MQQLRKKFKV LDFTYGFGTA NTALIYHHGK LMALSEADKP
201: YVVKVLEDGD LQTLGLLDYD KRLKHSFTAH PKVDPFTDEM FTFGYSHEPP YCTYRVINKE GAMLDPVPIT IPESVMMHDF AITENYSIFM DLPLLFRPKE
301: MVKNGEFIYK FDPTKKGRFG ILPRYAKDDK LIRWFQLPNC FIFHNANAWE EGDEVVLITC RLENPDLDKV NGYQSDKLEN FGNELYEMRF NMKTGAASQK
401: QLSVSAVDFP RVNESYTGRK QRYVYCTILD SIAKVTGIIK FDLHAEPESG VKELEVGGNV QGIYDLGPGR FGSEAIFVPK HPGVSGEEDD GYLIFFVHDE
501: NTGKSEVNVI DAKTMSADPV AVVELPNRVP YGFHAFFVTE DQLARQAEGQ

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.