CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

cytosol 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34746	Canola	cytosol	23.19	87.5
AT3G63520.1	Thale cress	cytosol	85.3	76.58
CDX93902	Canola	cytosol	83.02	76.38
Bra007826.1-P	Field mustard	plastid	94.41	76.13
CDY53711	Canola	cytosol	81.78	75.24
CDX76783	Canola	plastid	90.27	71.36
VIT_13s0064g00810.t01	Wine grape	cytosol	74.53	70.59
Zm00001d034075_P001	Maize	cytosol	5.18	69.44
VIT_13s0064g00840.t01	Wine grape	extracellular	75.16	66.48
CDX76782	Canola	mitochondrion	84.06	66.34
CDY34747	Canola	cytosol	18.43	65.93
Solyc01g087250.2.1	Tomato	cytosol, plastid	74.33	65.87
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	73.08	65.37
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	73.91	65.27
OQU93261	Sorghum	cytosol	73.29	65.07
Os12t0640600-01	Rice	plasma membrane	72.67	65.0
TraesCS5D01G001900.1	Wheat	cytosol, golgi	73.08	64.3
Zm00001d048373_P002	Maize	cytosol, plasma membrane	73.08	64.18
TraesCS5A01G001500.2	Wheat	cytosol	72.67	64.05
Solyc01g087260.2.1	Tomato	plastid	72.05	63.85
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	72.26	63.69
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	74.33	62.54
HORVU5Hr1G000320.9	Barley	plastid	73.08	62.26
TraesCS5D01G002800.1	Wheat	cytosol	70.39	61.71
TraesCS5B01G001800.1	Wheat	cytosol	68.74	61.48
HORVU4Hr1G006300.1	Barley	cytosol	69.98	60.9
TraesCS5A01G002400.1	Wheat	cytosol	70.19	60.21
TraesCS5A01G002200.1	Wheat	cytosol	64.8	59.17
TraesCS5D01G002900.1	Wheat	plastid	67.91	53.42
CDX82482	Canola	cytosol	30.64	37.37
CDY57471	Canola	cytosol	30.23	36.87
CDX98456	Canola	cytosol	19.25	36.47
CDY39117	Canola	mitochondrion	34.37	30.02
CDX99397	Canola	plastid	34.99	28.5
CDX78923	Canola	plastid	34.99	28.36
CDY61838	Canola	plastid	34.37	28.18
CDX85148	Canola	cytosol	33.95	28.03
CDY26294	Canola	plastid	34.16	28.01
CDX76489	Canola	plastid	30.85	28.01
CDY33218	Canola	plastid	34.58	27.93
CDY52448	Canola	plastid	34.78	27.91
CDX77467	Canola	plastid	33.75	27.86
CDY55629	Canola	cytosol, plastid	33.54	27.79
CDX97576	Canola	plastid	34.16	27.64
CDX88443	Canola	plastid	34.37	27.57
CDY01534	Canola	cytosol, plastid	33.13	27.44
CDX98455	Canola	plastid	33.75	27.3
CDX78842	Canola	plastid	32.3	26.85
CDX99475	Canola	plastid	31.88	26.51
CDX98457	Canola	plastid	12.84	19.68

Protein Annotations

EnsemblPlants:CDY34748	EnsemblPlantsGene:GSBRNA2T00057287001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF37	PFAM:PF03055	ProteinID:CDY34748	ProteinID:CDY34748.1	UniParc:UPI0004EDFE1D	UniProt:A0A078HD64
MapMan:9.1.6.3.1	:	:	:	:	:

Description

BnaA09g41150DBnaA09g41150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD64]

Coordinates

chrLK032341:-:46814..51279

Molecular Weight (calculated)

55245.0 Da

IEP (calculated)

6.831

GRAVY (calculated)

-0.175

Length

483 amino acids

Sequence
(BLAST)

001: MGSLFLIVFF VNYQECLNGI FLRVGPNPKF DPLAGYHWHF LGRVMIHGVR IKDGKATYVS RFVKTSRLQQ EEFFGDAKLM KIGDLKGFFG LVMVIMQQLR
101: IKLKVLDDSY GNGTANTSLI YHHGKLLALQ ETDKPYVIKV LEDGDLQTLG MTDYDKRLTH SFTAHPKVDP VTGEMFTFGC SPMPPYLTYR VISKDGIMHD
201: PVPITISKPV MMHDFAITET YAIFMDLPMH FRPKEMVKEK KMIYSFDPTK NARFGVLPRY AKDDLMIRWF ELPNCFIFHN ANAWEEEDEV VLITCRLENP
301: NLDMVSGNVE EILESFSNEL YEMRFNMKTG SASQKKLSAS SNYFPRINEC YTGKKNRYVY GYGTFLDGIS KVTGIIKLDL HAEAETGKRI LQVGGNIKGI
401: YKLGQGIYCS DAIYVPRESA EEDDGYLIFF FHDENTGKSC VHVIDARTMS AEPVAIVELP HRVPYGFHAL FVTERQLQEQ TLI

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.